Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 0.0e+00 2669.0 1371 100.0
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 7.4e-291 1004.6 612 85.5
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.8e-289 1000.0 652 84.5
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.5e-251 874.0 639 73.1
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 8.6e-239 831.6 634 66.9
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 3.3e-230 803.1 632 66.1
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 8.0e-229 798.5 630 65.7
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.3e-228 797.0 648 69.1
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 9.8e-227 791.6 640 66.4
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 5.4e-225 785.8 632 65.2
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 9.2e-225 785.0 634 65.9
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 6.0e-224 782.3 647 63.8
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.0e-223 781.6 632 64.2
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 3.9e-223 779.6 637 64.2
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 1.9e-222 777.3 576 71.4
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 4.7e-221 772.7 641 63.8
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 1.1e-220 771.5 632 63.8
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 2.3e-220 770.4 623 64.0
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 4.0e-220 769.6 623 64.8
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.7e-218 764.2 672 60.4
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 8.3e-218 761.9 639 63.1
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 1.4e-217 761.1 636 63.2
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 5.1e-215 752.7 632 67.1
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 2.8e-213 746.9 624 63.1
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.4e-211 740.0 640 62.0
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 5.8e-211 739.2 638 61.0
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 7.5e-211 738.8 622 62.7
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 1.7e-210 737.6 621 62.3
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 6.4e-210 735.7 631 62.4
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 3.5e-208 729.9 640 59.8
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.3e-207 728.0 625 60.5
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 7.3e-206 722.2 643 61.3
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 9.5e-206 721.8 635 60.6
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 4.7e-205 719.5 634 60.1
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.8e-204 717.6 632 60.8
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 4.0e-204 716.5 628 62.1
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 4.9e-202 709.5 639 59.6
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 4.9e-202 709.5 644 59.6
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 1.4e-201 708.0 628 58.9
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.4e-201 708.0 696 57.2
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 4.2e-201 706.4 635 57.8
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 1.2e-200 704.9 634 59.9
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 2.7e-200 703.7 636 61.3
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 7.8e-200 702.2 628 60.0
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 2.3e-199 700.7 639 58.7
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 1.9e-198 697.6 495 73.7
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 2.5e-198 697.2 635 60.0
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 1.1e-196 691.8 639 57.9
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 2.4e-196 690.6 572 62.6
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 3.8e-194 683.3 656 57.6
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 8.4e-194 682.2 635 57.3
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 1.1e-193 681.8 588 61.9
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.3e-193 678.7 601 61.1
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.7e-191 674.5 634 57.1
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 4.3e-190 669.8 546 64.1
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 7.3e-190 669.1 635 58.0
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 9.6e-190 668.7 639 56.0
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 9.6e-190 668.7 619 56.7
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.8e-189 667.2 651 56.5
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 2.4e-188 664.1 619 57.4
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 7.6e-187 659.1 643 55.5
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 3.8e-186 656.8 655 54.7
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 9.3e-185 652.1 624 55.9
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 9.3e-185 652.1 641 55.2
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 9.3e-185 652.1 640 54.7
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.2e-184 651.7 619 56.7
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 3.5e-184 650.2 633 55.5
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.9e-184 649.0 644 55.7
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 7.9e-184 649.0 623 56.0
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.1e-183 646.4 625 55.7
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 8.7e-183 645.6 635 54.8
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 1.1e-182 645.2 629 55.0
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 5.6e-182 642.9 639 54.8
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 3.7e-181 640.2 637 56.8
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 3.1e-180 637.1 615 56.4
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 5.8e-179 632.9 619 53.5
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 6.4e-178 629.4 634 54.1
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 1.4e-177 628.2 563 60.2
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 4.2e-177 626.7 540 60.6
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 9.3e-177 625.5 645 55.5
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.7e-176 624.0 714 51.4
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 4.6e-176 623.2 618 53.1
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 4.6e-176 623.2 643 54.0
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 6.0e-176 622.9 563 58.4
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 5.1e-175 619.8 493 65.1
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 3.3e-174 617.1 593 57.0
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.3e-173 615.1 635 52.3
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 3.1e-172 610.5 641 52.9
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 2.0e-171 607.8 612 54.7
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 3.4e-171 607.1 619 53.0
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 4.5e-171 606.7 583 55.9
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 2.9e-170 604.0 511 62.2
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 6.5e-170 602.8 634 52.1
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.9e-169 601.3 628 54.0
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.9e-169 601.3 632 52.4
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.9e-169 601.3 632 52.4
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 5.5e-169 599.7 632 52.2
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 7.1e-169 599.4 629 52.3
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 1.6e-168 598.2 633 54.2
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 6.1e-168 596.3 636 50.5
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 5.1e-167 593.2 632 51.9
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.1e-166 592.0 636 52.2
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.5e-166 591.7 515 61.6
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.9e-166 591.3 632 52.5
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 3.3e-166 590.5 672 49.6
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 4.3e-166 590.1 560 56.2
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 9.7e-166 589.0 633 51.8
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 9.7e-166 589.0 633 51.8
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 6.3e-165 586.3 632 51.6
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 2.4e-164 584.3 651 54.2
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.4e-161 575.1 597 53.9
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 7.9e-160 569.3 493 59.6
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 9.7e-158 562.4 598 52.3
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 1.4e-156 558.5 645 47.9
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.8e-156 558.1 631 49.8
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 6.5e-154 549.7 581 52.7
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 7.2e-153 546.2 630 48.1
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 2.7e-152 544.3 659 48.4
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.5e-150 538.5 516 54.8
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 3.5e-147 527.3 683 45.4
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 6.5e-146 523.1 526 55.1
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 7.2e-145 519.6 532 54.1
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.6e-144 518.5 619 49.6
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 2.7e-144 517.7 531 53.3
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.3e-140 503.4 421 62.2
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 7.0e-132 476.5 632 47.0
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 4.5e-123 447.2 471 51.8
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.7e-122 445.3 473 52.2
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 3.3e-121 441.0 613 42.1
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 4.2e-121 440.7 559 45.1
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.7e-120 437.2 475 52.0
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.7e-120 437.2 475 52.0
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 6.8e-119 433.3 617 43.4
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 2.0e-115 421.8 555 46.8
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 2.9e-109 401.4 543 43.8
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 2.5e-105 388.3 383 57.2
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 6.2e-104 383.6 514 45.3
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 4.3e-73 281.2 515 37.3
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 1.4e-71 276.2 551 35.6
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.2e-69 268.9 354 46.3
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.9e-65 255.8 293 53.6
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 5.7e-49 201.1 204 51.0
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 4.8e-48 198.0 194 48.5
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 3.2e-44 185.3 130 68.5
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 4.4e-25 121.7 158 36.7
Cfa014588 Carpinus fangiana HOM05D000363 ORTHO05D000236 1.4e-23 116.7 78 84.6
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 5.9e-22 111.3 156 46.8
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 1.2e-19 103.6 64 73.4
QL04p091051 Quercus lobata HOM05D004604 ORTHO05D013998 1.4e-10 73.6 69 62.3
QL01p024866 Quercus lobata HOM05D004604 ORTHO05D005744 3.0e-10 72.4 69 62.3
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.1e-07 63.9 61 50.8
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-07 63.5 39 66.7
SHI03466 Sapria himalayana HOM05D004604 ORTHO05D005744 3.5e-06 58.9 46 58.7


User provided reference genes

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