Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 4.8e-92 341.3 186 100.0
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 9.9e-90 333.6 186 97.3
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 7.9e-79 297.4 178 88.2
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 2.3e-78 295.8 185 81.1
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.9e-77 292.7 186 84.9
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 6.2e-76 287.7 186 77.4
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.1e-75 287.0 187 79.1
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 2.4e-75 285.8 186 76.9
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 1.5e-74 283.1 192 76.6
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 2.0e-74 282.7 186 77.4
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 5.8e-74 281.2 186 76.3
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.7e-73 279.6 186 75.3
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 3.8e-73 278.5 186 74.2
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 4.9e-73 278.1 186 76.3
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 2.1e-71 272.7 186 74.2
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 6.0e-71 271.2 186 73.1
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 1.3e-70 270.0 183 73.2
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 3.0e-70 268.9 186 74.2
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 3.0e-70 268.9 186 72.6
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 3.0e-70 268.9 186 72.6
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 3.0e-70 268.9 186 72.6
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 3.9e-70 268.5 186 72.6
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 1.5e-69 266.5 186 72.0
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.5e-69 266.5 186 72.0
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 1.9e-69 266.2 186 73.1
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 5.7e-69 264.6 187 71.1
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 9.7e-69 263.8 185 69.2
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 9.7e-69 263.8 184 71.2
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.3e-68 263.5 187 71.7
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 2.8e-68 262.3 186 70.4
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 6.3e-68 261.2 186 70.4
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.2e-68 260.8 186 70.4
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 1.4e-67 260.0 186 71.0
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.4e-67 260.0 186 71.5
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 1.8e-67 259.6 182 70.3
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 1.8e-67 259.6 186 69.9
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.8e-67 259.6 186 69.9
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 2.0e-66 256.1 184 70.1
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 7.7e-66 254.2 186 68.8
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 1.7e-65 253.1 207 65.7
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 2.2e-65 252.7 186 66.7
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 2.9e-65 252.3 186 67.7
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.9e-65 252.3 186 68.3
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.9e-65 252.3 186 68.3
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 3.8e-65 251.9 184 69.0
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.8e-65 251.9 186 67.2
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 3.8e-65 251.9 186 69.4
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 5.0e-65 251.5 186 69.4
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 6.5e-65 251.1 186 69.9
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 8.5e-65 250.8 186 69.9
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 8.5e-65 250.8 187 66.3
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.1e-64 250.4 181 69.6
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 1.4e-64 250.0 184 69.0
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.2e-64 248.8 186 69.9
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 9.4e-64 247.3 186 68.3
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.6e-63 246.5 185 68.6
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.6e-63 246.5 186 64.0
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 2.7e-63 245.7 185 65.4
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 3.6e-63 245.4 183 65.6
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 7.9e-63 244.2 187 64.7
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.8e-62 243.0 186 65.1
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.8e-62 243.0 184 65.2
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 2.3e-62 242.7 185 68.1
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 3.9e-62 241.9 183 67.2
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 5.1e-62 241.5 182 65.4
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 6.7e-62 241.1 184 65.2
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 8.8e-62 240.7 187 66.3
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 8.8e-62 240.7 184 65.2
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.1e-61 240.4 182 64.8
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 2.0e-61 239.6 187 64.2
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 3.3e-61 238.8 187 63.6
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 3.3e-61 238.8 183 65.6
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 7.4e-61 237.7 167 70.1
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 2.2e-60 236.1 187 63.1
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 8.2e-60 234.2 181 64.6
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.1e-59 233.8 183 64.5
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.4e-59 232.6 187 63.1
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.3e-59 231.5 187 63.6
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.2e-58 230.3 186 66.1
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.0e-57 227.3 171 67.8
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 5.0e-57 224.9 187 62.0
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 6.5e-57 224.6 166 69.3
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 7.2e-56 221.1 185 61.1
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 9.4e-56 220.7 182 62.1
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.6e-55 219.9 182 61.5
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 4.7e-55 218.4 182 61.0
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 1.4e-54 216.9 185 60.5
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.8e-54 216.5 182 60.4
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 1.8e-54 216.5 187 59.9
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 2.3e-54 216.1 185 61.6
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 2.3e-54 216.1 185 60.0
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 2.3e-54 216.1 187 59.4
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 6.7e-54 214.5 185 58.9
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 8.8e-54 214.2 185 60.5
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.1e-53 213.8 143 73.4
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 3.3e-53 212.2 189 60.3
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 7.4e-53 211.1 182 58.2
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 7.4e-53 211.1 189 59.8
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 1.7e-52 209.9 185 58.4
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.7e-52 209.9 142 71.8
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 1.7e-52 209.9 189 58.7
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 2.2e-52 209.5 185 58.4
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 2.8e-52 209.1 189 58.7
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 2.8e-52 209.1 189 58.7
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 3.7e-52 208.8 189 57.7
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 4.8e-52 208.4 183 56.8
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 8.2e-52 207.6 182 58.2
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 9.1e-51 204.1 185 58.9
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 5.5e-48 194.9 183 57.9
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.2e-47 193.7 200 55.5
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 5.2e-46 188.3 183 50.3
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.6e-45 186.0 203 52.7
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 4.4e-45 185.3 185 48.6
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.7e-44 183.3 143 62.2
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 3.7e-44 182.2 189 55.6
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 6.3e-44 181.4 183 47.5
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 1.2e-42 177.2 182 48.9
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 1.7e-41 173.3 186 54.8
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 2.2e-41 172.9 161 62.7
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 3.8e-41 172.2 150 60.7
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.0e-41 171.8 168 55.4
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 5.0e-41 171.8 166 55.4
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.9e-40 169.9 185 47.0
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.9e-40 169.9 113 70.8
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 7.2e-40 167.9 142 62.0
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 6.7e-38 161.4 183 45.4
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.0e-37 159.8 187 49.2
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 4.4e-37 158.7 103 72.8
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 1.7e-33 146.7 185 40.0
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 6.8e-30 134.8 158 51.9
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.3e-24 115.9 104 54.8
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 9.8e-21 104.4 71 67.6
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 8.3e-20 101.3 97 57.7
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.4e-19 100.5 117 46.2
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.0e-17 94.4 138 42.8
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 6.6e-17 91.7 167 30.5
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 3.3e-16 89.4 129 32.6
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.4e-14 84.0 62 67.7
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 8.9e-14 81.3 72 51.4
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 1.9e-11 73.6 83 54.2
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 3.2e-11 72.8 126 31.0
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 4.6e-10 68.9 161 29.8
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 3.3e-08 62.8 37 73.0


User provided reference genes

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