Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 2.3e-188 662.1 347 100.0
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 9.1e-137 490.7 326 83.1
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 1.4e-89 334.0 220 82.3
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 5.8e-83 312.0 220 78.2
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 3.6e-69 266.2 238 63.4
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 3.8e-66 256.1 233 63.1
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 4.2e-65 252.7 241 61.0
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 4.2e-65 252.7 240 60.8
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 4.6e-64 249.2 235 60.9
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 6.0e-64 248.8 236 62.3
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 3.9e-63 246.1 240 60.8
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 1.9e-62 243.8 241 58.5
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 1.6e-61 240.7 236 60.6
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 4.8e-61 239.2 241 57.7
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 1.2e-59 234.6 221 62.9
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 9.9e-59 231.5 243 58.4
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 1.3e-58 231.1 221 62.4
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 1.7e-58 230.7 238 57.1
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 9.3e-57 224.9 242 57.0
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 2.1e-56 223.8 242 56.6
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 3.5e-56 223.0 242 56.6
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 3.5e-56 223.0 242 56.6
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 7.9e-56 221.9 243 58.4
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.3e-55 221.1 233 56.7
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 8.7e-55 218.4 230 60.4
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 1.9e-54 217.2 230 60.0
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 1.9e-54 217.2 226 61.1
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 2.1e-53 213.8 223 57.4
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 4.8e-53 212.6 245 53.5
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 4.8e-53 212.6 237 56.5
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 4.8e-53 212.6 241 53.9
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 1.1e-52 211.5 233 54.5
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 1.4e-52 211.1 242 55.8
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 4.0e-52 209.5 242 54.1
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 5.3e-52 209.1 236 55.5
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 1.5e-51 207.6 242 55.0
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 1.5e-51 207.6 237 55.3
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 2.0e-51 207.2 244 53.7
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 3.4e-51 206.5 223 56.1
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 4.5e-51 206.1 222 55.4
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 4.5e-51 206.1 238 56.7
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 5.8e-51 205.7 226 58.0
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 5.8e-51 205.7 231 53.2
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 7.6e-51 205.3 230 56.5
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 6.4e-50 202.2 243 52.7
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 1.1e-49 201.4 234 55.1
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 1.4e-49 201.1 212 57.1
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 4.2e-49 199.5 198 60.6
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 4.6e-48 196.1 215 56.3
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 1.0e-47 194.9 217 55.3
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 1.3e-47 194.5 211 55.9
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 1.8e-47 194.1 235 51.1
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 3.0e-47 193.4 240 53.8
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 3.9e-47 193.0 235 52.8
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 8.7e-47 191.8 199 55.8
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 4.3e-46 189.5 236 50.8
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 5.6e-46 189.1 219 52.5
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 5.6e-46 189.1 210 56.2
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 9.6e-46 188.3 193 57.5
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 1.3e-45 188.0 178 61.2
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 3.7e-45 186.4 242 50.0
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 3.7e-45 186.4 184 58.7
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 4.8e-45 186.0 210 56.7
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 6.2e-45 185.7 188 60.1
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 8.1e-45 185.3 222 51.8
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 3.1e-44 183.3 235 50.6
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 4.0e-44 183.0 191 57.6
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 5.3e-44 182.6 231 51.1
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 9.0e-44 181.8 219 50.7
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 2.1e-40 170.6 210 49.5
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 2.7e-40 170.2 235 48.5
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 3.9e-39 166.4 105 79.0
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 3.9e-39 166.4 105 79.0
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 5.1e-39 166.0 219 47.9
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 3.3e-38 163.3 214 51.9
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 3.3e-38 163.3 147 64.6
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 9.6e-38 161.8 223 48.0
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 1.3e-37 161.4 142 62.7
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 1.3e-37 161.4 182 52.2
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 1.6e-37 161.0 205 50.2
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 3.7e-37 159.8 191 50.8
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 6.2e-37 159.1 220 43.6
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 8.2e-37 158.7 149 57.7
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 1.1e-36 158.3 202 49.5
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 1.4e-36 157.9 226 49.1
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 1.8e-36 157.5 114 69.3
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 1.8e-36 157.5 114 69.3
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 1.8e-36 157.5 114 69.3
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 1.8e-36 157.5 114 69.3
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 3.1e-36 156.8 125 65.6
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 3.1e-36 156.8 125 65.6
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 4.1e-36 156.4 125 65.6
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 6.9e-36 155.6 182 51.1
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 9.0e-36 155.2 149 57.0
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 1.2e-35 154.8 176 54.0
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 2.0e-35 154.1 243 43.6
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 1.3e-34 151.4 134 64.2
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 1.1e-33 148.3 182 50.0
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 1.1e-33 148.3 168 57.7
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 1.6e-32 144.4 201 50.7
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 3.5e-32 143.3 155 56.1
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 1.1e-30 138.3 162 54.9
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 1.3e-29 134.8 139 58.3
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 2.0e-27 127.5 229 41.0
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 4.6e-24 116.3 83 68.7
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 1.8e-23 114.4 207 41.5
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 4.5e-19 99.8 146 43.2
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 2.2e-18 97.4 234 34.2
Lj8C64T12 Lonicera japonica HOM05D007292 ORTHO05D009084 1.3e-10 71.6 161 39.8
AagrBONN_evm.TU.Sc2ySwM_344.666 Anthoceros agrestis HOM05D007292 ORTHO05D009084 3.2e-09 67.0 134 38.8
Lsat_1_v5_gn_7_113640 Lactuca sativa HOM05D007823 ORTHO05D000174 8.8e-07 58.9 55 52.7
Mapoly0147s0009 Marchantia polymorpha HOM05D007292 ORTHO05D009084 1.5e-06 58.2 86 39.5
Pp3c10_22900 Physcomitrium patens HOM05D033432 ORTHO05D009084 7.5e-06 55.8 127 36.2


User provided reference genes

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