Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001203 Carpinus fangiana HOM05D005587 ORTHO05D034190 5.1e-75 284.3 137 100.0
Cfa018817 Carpinus fangiana HOM05D005587 ORTHO05D034190 5.1e-75 284.3 137 100.0
Cfa019866 Carpinus fangiana HOM05D005587 ORTHO05D034190 5.1e-75 284.3 137 100.0
Haze_27444 Corylus avellana HOM05D005587 ORTHO05D007287 2.6e-18 95.9 131 48.9
Haze_06344 Corylus avellana HOM05D005587 ORTHO05D007287 7.5e-18 94.4 101 58.4
Haze_02898 Corylus avellana HOM05D005587 ORTHO05D007287 8.3e-17 90.9 123 46.3
CiPaw.13G083300 Carya illinoinensis HOM05D005587 ORTHO05D007287 8.5e-14 80.9 123 40.7
Cfa003258 Carpinus fangiana HOM05D001267 ORTHO05D001323 1.9e-13 79.7 115 46.1
QL04p026316 Quercus lobata HOM05D005587 ORTHO05D007287 1.9e-13 79.7 123 41.5
Hma1.2p1_0173F.1_g076460 Hydrangea macrophylla HOM05D005587 ORTHO05D007287 3.2e-13 79.0 123 40.7
Hma1.2p1_0173F.1_g076470 Hydrangea macrophylla HOM05D005587 ORTHO05D007287 3.2e-13 79.0 123 40.7
CANSAT25G2964 Cannabis sativa HOM05D005587 ORTHO05D007287 9.4e-13 77.4 123 39.8
CANSAT78G1032 Cannabis sativa HOM05D005587 ORTHO05D007287 1.4e-11 73.6 123 36.6
Ciclev10014906m.g Citrus clementina HOM05D005587 ORTHO05D007287 2.3e-11 72.8 123 39.0
Manes.05G057700 Manihot esculenta HOM05D005587 ORTHO05D007287 3.0e-11 72.4 123 35.8
Nn1g00683 Nelumbo nucifera HOM05D005587 ORTHO05D007287 5.2e-11 71.6 123 39.0
Prupe.2G118200 Prunus persica HOM05D005587 ORTHO05D007287 6.8e-11 71.2 123 38.2
RcHm_v2.0_Chr1g0344321 Rosa chinensis HOM05D005587 ORTHO05D007287 8.8e-11 70.9 123 37.4
HanXRQChr17g0542121 Helianthus annuus HOM05D005587 ORTHO05D007287 1.2e-10 70.5 123 34.1
Lj9A550G69 Lonicera japonica HOM05D005587 ORTHO05D007287 1.2e-10 70.5 123 36.6
CSS0020453 Camellia sinensis var. sinensis HOM05D005587 ORTHO05D007287 1.5e-10 70.1 123 37.4
CSS0020891 Camellia sinensis var. sinensis HOM05D005587 ORTHO05D007287 1.5e-10 70.1 123 37.4
GSVIVG01018341001 Vitis vinifera HOM05D005587 ORTHO05D007287 1.5e-10 70.1 79 50.6
MELO3C022453.2 Cucumis melo HOM05D005587 ORTHO05D007287 2.6e-10 69.3 123 39.0
MD02G1223000 Malus domestica HOM05D005587 ORTHO05D007287 3.4e-10 68.9 123 37.4
THA.LOC104817180 Tarenaya hassleriana HOM05D005587 ORTHO05D007287 3.4e-10 68.9 123 35.0
CsaV3_6G006720 Cucumis sativus L. HOM05D005587 ORTHO05D007287 4.4e-10 68.6 123 37.4
ECA236G1181 Erigeron canadensis HOM05D005587 ORTHO05D007287 4.4e-10 68.6 123 36.6
Oeu018164.2 Olea europaea HOM05D005587 ORTHO05D007287 4.4e-10 68.6 93 44.1
Atru.chr4.1483 Acer truncatum HOM05D005587 ORTHO05D007287 5.7e-10 68.2 123 36.6
Cfa011027 Carpinus fangiana HOM05D005587 ORTHO05D007287 5.7e-10 68.2 37 78.4
ClCG06G000880 Citrullus lanatus HOM05D005587 ORTHO05D007287 5.7e-10 68.2 123 37.4
Hund17123 Selenicereus undatus HOM05D005587 ORTHO05D007287 5.7e-10 68.2 123 37.4
vmacro21076 Vaccinium macrocarpon HOM05D005587 ORTHO05D007287 5.7e-10 68.2 123 38.2
AUR62013785 Chenopodium quinoa HOM05D005587 ORTHO05D007287 7.5e-10 67.8 123 35.8
SHI49641 Sapria himalayana HOM05D005587 ORTHO05D007287 9.8e-10 67.4 123 36.6
AUR62023371 Chenopodium quinoa HOM05D005587 ORTHO05D007287 1.3e-09 67.0 123 35.0
Cc02_g25560 Coffea canephora HOM05D005587 ORTHO05D007287 1.3e-09 67.0 123 35.0
FvH4_7g08900 Fragaria vesca HOM05D005587 ORTHO05D007287 1.7e-09 66.6 123 36.6
FAN06G5081 Fragaria x ananassa HOM05D005587 ORTHO05D007287 1.7e-09 66.6 123 36.6
Lj5g0020653 Lotus japonicus HOM05D005587 ORTHO05D007287 1.7e-09 66.6 123 35.8
PGR004G1682 Punica granatum HOM05D005587 ORTHO05D007287 1.7e-09 66.6 123 38.2
Sc02g0003240 Simmondsia chinensis HOM05D005587 ORTHO05D007287 1.7e-09 66.6 123 34.1
TPR.G9570 Trifolium pratense HOM05D005587 ORTHO05D007287 1.7e-09 66.6 123 35.0
Migut.N01719 Erythranthe guttata HOM05D005587 ORTHO05D007287 2.2e-09 66.2 43 74.4
Glyma.08G098700 Glycine max HOM05D005587 ORTHO05D007287 2.2e-09 66.2 123 35.8
Lj4g0023083 Lotus japonicus HOM05D005587 ORTHO05D007287 2.2e-09 66.2 123 35.8
Nitab4.5_0005064g0010 Nicotiana tabacum HOM05D005587 ORTHO05D007287 2.2e-09 66.2 123 35.8
Sed0021182 Sechium edule HOM05D005587 ORTHO05D007287 2.2e-09 66.2 123 36.6
DCAR_025030 Daucus carota HOM05D005587 ORTHO05D007287 2.8e-09 65.9 123 35.8
Nitab4.5_0007434g0020 Nicotiana tabacum HOM05D005587 ORTHO05D007287 2.8e-09 65.9 123 35.8
Sopen01g035500 Solanum pennellii HOM05D005587 ORTHO05D007287 2.8e-09 65.9 123 35.8
CAN.G756.20 Capsicum annuum HOM05D005587 ORTHO05D007287 3.7e-09 65.5 123 35.0
Phvul.007G221000 Phaseolus vulgaris HOM05D005587 ORTHO05D007287 3.7e-09 65.5 123 35.8
Prupe.2G117600 Prunus persica HOM05D005587 ORTHO05D007287 3.7e-09 65.5 123 35.8
Medtr5g077540 Medicago truncatula HOM05D005587 ORTHO05D007287 4.8e-09 65.1 123 35.8
PGSC0003DMG402001720 Solanum tuberosum HOM05D005587 ORTHO05D007287 4.8e-09 65.1 123 35.8
Lalb_Chr07g0187551 Lupinus albus HOM05D005587 ORTHO05D007287 6.3e-09 64.7 123 34.1
COL.COLO4_23407 Corchorus olitorius HOM05D005587 ORTHO05D007287 8.3e-09 64.3 123 35.8
Duzib168G0929 Durio zibethinus HOM05D005587 ORTHO05D007287 8.3e-09 64.3 123 36.6
FAN03G1924 Fragaria x ananassa HOM05D005587 ORTHO05D007287 8.3e-09 64.3 123 37.4
FAN10G3974 Fragaria x ananassa HOM05D005587 ORTHO05D007287 8.3e-09 64.3 123 37.4
SGA_v2.0_scaffold95G28723 Striga asiatica HOM05D005587 ORTHO05D007287 8.3e-09 64.3 43 72.1
TAR375G0462 Trochodendron aralioides HOM05D005587 ORTHO05D007287 8.3e-09 64.3 123 35.0
Lsat_1_v5_gn_3_39780 Lactuca sativa HOM05D005587 ORTHO05D007287 1.4e-08 63.5 123 35.0
Rhsim01G0143000 Rhododendron simsii HOM05D005587 ORTHO05D007287 1.4e-08 63.5 31 83.9
TWI59G0612 Tripterygium wilfordii HOM05D005587 ORTHO05D007287 1.4e-08 63.5 123 35.0
Ah.05g177750 Amaranthus hybridus HOM05D005587 ORTHO05D007287 1.8e-08 63.2 123 35.0
ATR1098G018 Amborella trichopoda HOM05D005587 ORTHO05D007287 1.8e-08 63.2 37 73.0
Eucgr.E01703 Eucalyptus grandis HOM05D005587 ORTHO05D007287 2.4e-08 62.8 123 32.5
FAN10G2519 Fragaria x ananassa HOM05D005587 ORTHO05D007287 2.4e-08 62.8 123 36.6
Peaxi162Scf00793g00218 Petunia axillaris HOM05D005587 ORTHO05D007287 4.1e-08 62.0 37 70.3
VMungo0720G2234 Vigna mungo HOM05D005587 ORTHO05D007287 4.1e-08 62.0 123 34.1
arahy.Tifrunner.gnm1.ann1.5U4ES3 Arachis hypogaea HOM05D005587 ORTHO05D007287 5.4e-08 61.6 123 34.1
Gorai.003G062300 Gossypium raimondii HOM05D005587 ORTHO05D007287 5.4e-08 61.6 58 50.0
Pp3c14_19880 Physcomitrium patens HOM05D005587 ORTHO05D007287 5.4e-08 61.6 31 74.2
EL10Ac1g00718 Beta vulgaris HOM05D005587 ORTHO05D007287 7.0e-08 61.2 123 32.5
Gohir.A02G117800 Gossypium hirsutum HOM05D005587 ORTHO05D007287 7.0e-08 61.2 31 77.4
Gohir.D03G058500 Gossypium hirsutum HOM05D005587 ORTHO05D007287 7.0e-08 61.2 31 77.4
PSO063G5522 Papaver somniferum HOM05D005587 ORTHO05D007287 7.0e-08 61.2 123 33.3
Thecc.09G197000 Theobroma cacao HOM05D005587 ORTHO05D007287 7.0e-08 61.2 31 80.6
PSO782G3200 Papaver somniferum HOM05D005587 ORTHO05D007287 9.1e-08 60.8 123 32.5
Psat7g081520 Pisum sativum HOM05D005587 ORTHO05D007287 9.1e-08 60.8 123 34.1
Potri.014G053200 Populus trichocarpa HOM05D005587 ORTHO05D007287 9.1e-08 60.8 37 67.6
Sabra14G0040000 Salix brachista HOM05D005587 ORTHO05D007287 9.1e-08 60.8 37 67.6
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 1.2e-07 60.5 119 35.3
SGA_v2.0_scaffold77G25257 Striga asiatica HOM05D005587 ORTHO05D007287 1.6e-07 60.1 48 60.4
Aqoxy5G01488 Aquilegia oxysepala HOM05D005587 ORTHO05D007287 2.0e-07 59.7 37 70.3
CBR_g3471 Chara braunii HOM05D005587 ORTHO05D000231 2.0e-07 59.7 37 62.2
unitig_748.g7122 Utricularia gibba HOM05D005587 ORTHO05D007287 2.0e-07 59.7 42 69.0
FAN01G1806 Fragaria x ananassa HOM05D005587 ORTHO05D007287 2.7e-07 59.3 123 36.6
AagrBONN_evm.TU.Sc2ySwM_362.1445 Anthoceros agrestis HOM05D005587 ORTHO05D007287 5.9e-07 58.2 31 71.0
Aa31LG1G26200 Aethionema arabicum HOM05D005587 ORTHO05D007287 7.7e-07 57.8 37 64.9
Thhalv10001410m.g Eutrema salsugineum HOM05D005587 ORTHO05D007287 7.7e-07 57.8 37 64.9
Sp4g26740 Schrenkiella parvula HOM05D005587 ORTHO05D007287 7.7e-07 57.8 37 64.9
HPP92_001519 Vanilla planifolia HOM05D005587 ORTHO05D007287 7.7e-07 57.8 37 67.6
CDE03G0214 Ceratophyllum demersum HOM05D005587 ORTHO05D007287 1.7e-06 56.6 35 68.6
Cre09.g414250 Chlamydomonas reinhardtii HOM05D005587 ORTHO05D007287 2.9e-06 55.8 32 68.8
BcaB02g08845 Brassica carinata HOM05D005587 ORTHO05D007287 3.8e-06 55.5 31 71.0
BcaC02g12284 Brassica carinata HOM05D005587 ORTHO05D007287 3.8e-06 55.5 31 71.0
BcaC02g12285 Brassica carinata HOM05D005587 ORTHO05D007287 3.8e-06 55.5 31 71.0
A05p04800 Brassica napus HOM05D005587 ORTHO05D007287 3.8e-06 55.5 31 71.0
C04p05630 Brassica napus HOM05D005587 ORTHO05D007287 3.8e-06 55.5 31 71.0
BolC4t22192H Brassica oleracea HOM05D005587 ORTHO05D007287 3.8e-06 55.5 31 71.0
BraA05t19456Z Brassica rapa HOM05D005587 ORTHO05D007287 3.8e-06 55.5 31 71.0
Mapoly0011s0009 Marchantia polymorpha HOM05D005587 ORTHO05D007287 5.0e-06 55.1 31 64.5
SMO228G0062 Selaginella moellendorffii HOM05D005587 ORTHO05D007287 5.0e-06 55.1 31 64.5


User provided reference genes

Program Settings