Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.8e-30 135.2 65 100.0
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 3.0e-25 117.9 64 85.9
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 3.4e-21 104.4 63 79.4
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.8e-20 100.9 55 83.6
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 2.5e-19 98.2 57 77.2
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 2.1e-18 95.1 61 77.0
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.5e-18 94.4 61 73.8
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.0e-17 92.8 59 76.3
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.3e-17 92.4 60 68.3
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 1.3e-17 92.4 53 75.5
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 2.3e-17 91.7 59 74.6
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 5.1e-17 90.5 61 67.2
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 5.1e-17 90.5 62 66.1
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 6.7e-17 90.1 55 78.2
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 1.5e-16 89.0 63 63.5
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 2.5e-16 88.2 57 73.7
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 2.5e-16 88.2 58 72.4
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 2.5e-16 88.2 63 61.9
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 3.3e-16 87.8 53 73.6
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 4.3e-16 87.4 63 60.3
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 5.7e-16 87.0 51 72.5
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 9.6e-16 86.3 58 63.8
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 9.6e-16 86.3 52 69.2
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 9.6e-16 86.3 52 69.2
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 9.6e-16 86.3 52 69.2
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 1.6e-15 85.5 55 67.3
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 2.1e-15 85.1 63 60.3
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 2.8e-15 84.7 62 62.9
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.8e-15 84.7 62 62.9
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 2.8e-15 84.7 62 64.5
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.7e-15 84.3 51 76.5
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 3.7e-15 84.3 51 76.5
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 4.8e-15 84.0 62 64.5
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 8.2e-15 83.2 52 67.3
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 8.2e-15 83.2 54 66.7
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 8.2e-15 83.2 51 74.5
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 8.2e-15 83.2 58 70.7
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 1.1e-14 82.8 62 62.9
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 1.4e-14 82.4 63 63.5
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 1.4e-14 82.4 60 61.7
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 2.4e-14 81.6 61 62.3
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 3.1e-14 81.3 57 63.2
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 4.1e-14 80.9 59 64.4
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 4.1e-14 80.9 60 60.0
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 5.3e-14 80.5 63 58.7
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 9.0e-14 79.7 62 61.3
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 3.4e-13 77.8 47 78.7
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 3.4e-13 77.8 46 76.1
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 3.4e-13 77.8 46 76.1
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 4.5e-13 77.4 67 56.7
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 1.0e-12 76.3 55 58.2
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 1.0e-12 76.3 55 58.2
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 1.3e-12 75.9 60 63.3
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 1.7e-12 75.5 56 60.7
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.7e-12 75.5 61 60.7
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 1.7e-12 75.5 56 58.9
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.2e-12 75.1 79 50.6
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.9e-12 74.7 61 60.7
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 6.5e-12 73.6 54 57.4
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 8.4e-12 73.2 92 43.5
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 1.4e-11 72.4 49 63.3
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 2.5e-11 71.6 54 57.4
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 2.5e-11 71.6 55 56.4
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 2.5e-11 71.6 54 57.4
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 2.5e-11 71.6 55 56.4
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 2.5e-11 71.6 54 57.4
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 2.5e-11 71.6 61 59.0
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 3.2e-11 71.2 53 60.4
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 7.2e-11 70.1 49 65.3
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 9.3e-11 69.7 53 56.6
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 9.3e-11 69.7 49 61.2
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 1.6e-10 68.9 49 63.3
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 2.1e-10 68.6 62 56.5
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 3.5e-10 67.8 49 59.2
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 3.5e-10 67.8 49 63.3
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 4.6e-10 67.4 49 61.2
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 6.1e-10 67.0 46 63.0
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 6.1e-10 67.0 46 63.0
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 7.9e-10 66.6 46 60.9
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 7.9e-10 66.6 46 60.9
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 7.9e-10 66.6 49 61.2
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 1.0e-09 66.2 55 52.7
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 1.0e-09 66.2 42 66.7
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 1.3e-09 65.9 49 59.2
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 1.8e-09 65.5 40 65.0
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 2.3e-09 65.1 46 60.9
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 3.9e-09 64.3 53 49.1
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 6.7e-09 63.5 49 55.1
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 6.7e-09 63.5 49 55.1
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 1.1e-08 62.8 47 61.7
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 1.1e-08 62.8 47 57.4
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 1.5e-08 62.4 47 66.0
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 3.3e-08 61.2 45 66.7
Sc11g0006040 Simmondsia chinensis HOM05D007120 ORTHO05D008881 4.3e-08 60.8 47 59.6
HPP92_000774 Vanilla planifolia HOM05D007120 ORTHO05D008881 4.3e-08 60.8 45 66.7
HPP92_026799 Vanilla planifolia HOM05D007120 ORTHO05D008881 4.3e-08 60.8 45 66.7
Sed0014987 Sechium edule HOM05D007120 ORTHO05D008881 9.7e-08 59.7 55 50.9
FAN06G1351 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.3e-07 59.3 31 74.2
CBR_g11002 Chara braunii HOM05D007120 ORTHO05D008881 2.2e-07 58.5 61 41.0
CsaV3_6G002350 Cucumis sativus L. HOM05D007120 ORTHO05D008881 2.8e-07 58.2 51 60.8
CsaV3_5G011100 Cucumis sativus L. HOM05D007120 ORTHO05D008881 3.7e-07 57.8 44 61.4
Sopen07g008940 Solanum pennellii HOM05D007120 ORTHO05D008881 4.8e-07 57.4 41 70.7
ClCG11G005640 Citrullus lanatus HOM05D007120 ORTHO05D008881 1.1e-06 56.2 45 62.2
QL09p041996 Quercus lobata HOM05D031581 ORTHO05D008881 1.1e-06 56.2 60 50.0
Hund15797 Selenicereus undatus HOM05D007120 ORTHO05D008881 1.1e-06 56.2 47 59.6
MELO3C020013.2 Cucumis melo HOM05D007120 ORTHO05D008881 1.8e-06 55.5 45 64.4
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 1.8e-06 55.5 60 46.7
Peaxi162Scf00184g00003 Petunia axillaris HOM05D007120 ORTHO05D008881 3.1e-06 54.7 41 58.5
TAR633G1173 Trochodendron aralioides HOM05D009315 ORTHO05D008839 4.1e-06 54.3 36 72.2
EL10Ac2g02666 Beta vulgaris HOM05D007120 ORTHO05D008881 9.0e-06 53.1 45 55.6


User provided reference genes

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