Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001184 Carpinus fangiana HOM05D001283 ORTHO05D001109 1.1e-60 236.5 124 100.0
CiPaw.02G184600 Carya illinoinensis HOM05D001283 ORTHO05D001109 4.8e-16 88.2 67 77.6
Ciclev10032342m.g Citrus clementina HOM05D001283 ORTHO05D001109 5.4e-15 84.7 56 91.1
Thecc.10G040700 Theobroma cacao HOM05D001283 ORTHO05D001109 1.2e-14 83.6 54 90.7
Manes.10G029600 Manihot esculenta HOM05D001283 ORTHO05D001109 2.0e-14 82.8 55 89.1
CiPaw.01G288100 Carya illinoinensis HOM05D001283 ORTHO05D001109 7.7e-14 80.9 54 88.9
ClCG07G003240 Citrullus lanatus HOM05D001283 ORTHO05D001109 7.7e-14 80.9 60 81.7
Hund13768 Selenicereus undatus HOM05D001283 ORTHO05D001109 7.7e-14 80.9 69 73.9
TAR633G1370 Trochodendron aralioides HOM05D001283 ORTHO05D001109 1.3e-13 80.1 54 72.2
GSVIVG01016562001 Vitis vinifera HOM05D001283 ORTHO05D001109 2.2e-13 79.3 56 85.7
Atru.chr12.439 Acer truncatum HOM05D001283 ORTHO05D001109 3.8e-13 78.6 61 77.0
CSS0043084 Camellia sinensis var. sinensis HOM05D001283 ORTHO05D001109 5.0e-13 78.2 54 81.5
Potri.010G203200 Populus trichocarpa HOM05D001283 ORTHO05D001109 1.1e-12 77.0 55 85.5
TWI63G0311 Tripterygium wilfordii HOM05D001283 ORTHO05D001109 1.5e-12 76.6 62 64.5
TAR369G1016 Trochodendron aralioides HOM05D001283 ORTHO05D001109 1.5e-12 76.6 54 85.2
Hma1.2p1_0953F.1_g241130 Hydrangea macrophylla HOM05D001283 ORTHO05D001109 1.9e-12 76.3 66 71.2
Cfa001468 Carpinus fangiana HOM05D001283 ORTHO05D001109 2.5e-12 75.9 64 71.9
vmacro10229 Vaccinium macrocarpon HOM05D001283 ORTHO05D426466 2.5e-12 75.9 56 76.8
MBI05_g22024_MAGBIO Magnolia biondii HOM05D001283 ORTHO05D001109 7.2e-12 74.3 54 83.3
Haze_17074 Corylus avellana HOM05D001283 ORTHO05D001109 1.2e-11 73.6 70 65.7
MELO3C023845.2 Cucumis melo HOM05D001283 ORTHO05D001109 1.2e-11 73.6 59 69.5
Lj1A939G60 Lonicera japonica HOM05D001283 ORTHO05D001109 2.7e-11 72.4 54 79.6
Aa31LG10G10500 Aethionema arabicum HOM05D001283 ORTHO05D001109 6.1e-11 71.2 62 74.2
Rhsim09G0166300 Rhododendron simsii HOM05D001283 ORTHO05D001109 6.1e-11 71.2 55 70.9
EL10Ac2g04740 Beta vulgaris HOM05D001283 ORTHO05D001109 1.0e-10 70.5 66 71.2
AUR62012095 Chenopodium quinoa HOM05D001283 ORTHO05D001109 1.0e-10 70.5 66 69.7
Eucgr.J00004 Eucalyptus grandis HOM05D001283 ORTHO05D001109 1.0e-10 70.5 60 73.3
Gorai.011G262000 Gossypium raimondii HOM05D001283 ORTHO05D001109 1.0e-10 70.5 59 66.1
Cc02_g07770 Coffea canephora HOM05D001283 ORTHO05D001109 1.4e-10 70.1 54 83.3
Carub.0005s2218 Capsella rubella HOM05D001283 ORTHO05D001109 1.8e-10 69.7 54 72.2
TAR636G1482 Trochodendron aralioides HOM05D001283 ORTHO05D001109 1.8e-10 69.7 54 77.8
AUR62039371 Chenopodium quinoa HOM05D001283 ORTHO05D001109 2.3e-10 69.3 66 68.2
QL08p059648 Quercus lobata HOM05D001283 ORTHO05D001109 2.3e-10 69.3 61 73.8
Sp5g07010 Schrenkiella parvula HOM05D001283 ORTHO05D001109 2.3e-10 69.3 54 75.9
Nn2g11117 Nelumbo nucifera HOM05D001283 ORTHO05D001109 3.0e-10 68.9 54 72.2
THA.LOC104807945 Tarenaya hassleriana HOM05D001283 ORTHO05D001109 6.8e-10 67.8 54 77.8
BcaC02g09759 Brassica carinata HOM05D001283 ORTHO05D001109 8.8e-10 67.4 53 71.7
C04p36890 Brassica napus HOM05D001283 ORTHO05D001109 8.8e-10 67.4 53 71.7
BolC4t25255H Brassica oleracea HOM05D001283 ORTHO05D001109 8.8e-10 67.4 53 71.7
COL.COLO4_15056 Corchorus olitorius HOM05D001719 ORTHO05D007646 8.8e-10 67.4 63 69.8
Gohir.A10G220000 Gossypium hirsutum HOM05D001283 ORTHO05D001109 1.2e-09 67.0 59 61.0
vmacro07176 Vaccinium macrocarpon HOM05D001283 ORTHO05D001109 1.2e-09 67.0 54 72.2
Aqoxy2G02150 Aquilegia oxysepala HOM05D001283 ORTHO05D001109 1.5e-09 66.6 54 74.1
Duzib114G0871 Durio zibethinus HOM05D001283 ORTHO05D001109 1.5e-09 66.6 59 72.9
Gohir.D10G229500 Gossypium hirsutum HOM05D001283 ORTHO05D001109 1.5e-09 66.6 56 82.1
Nn2g13353 Nelumbo nucifera HOM05D001283 ORTHO05D001109 1.5e-09 66.6 54 68.5
PGR044G0210 Punica granatum HOM05D001283 ORTHO05D001109 2.0e-09 66.2 57 63.2
RhsimUnG0042200 Rhododendron simsii HOM05D001283 ORTHO05D001109 4.4e-09 65.1 55 67.3
CARHR165480 Cardamine hirsuta HOM05D001283 ORTHO05D001109 9.8e-09 63.9 58 74.1
Potri.008G056600 Populus trichocarpa HOM05D001283 ORTHO05D001109 9.8e-09 63.9 56 71.4
Rhsim03G0130000 Rhododendron simsii HOM05D001283 ORTHO05D001109 1.3e-08 63.5 54 68.5
Thhalv10010627m.g Eutrema salsugineum HOM05D001283 ORTHO05D001109 1.7e-08 63.2 54 66.7
A04p04470 Brassica napus HOM05D001283 ORTHO05D001109 2.8e-08 62.4 55 76.4
CDE08G0431 Ceratophyllum demersum HOM05D000046 ORTHO05D000667 2.8e-08 62.4 56 71.4
Sed0013318 Sechium edule HOM05D001283 ORTHO05D001109 2.8e-08 62.4 61 65.6
BraA04t16158Z Brassica rapa HOM05D001283 ORTHO05D001109 3.7e-08 62.0 56 75.0
AL5G36610 Arabidopsis lyrata HOM05D001283 ORTHO05D001109 4.9e-08 61.6 58 72.4
Os02g0252100 Oryza sativa ssp. japonica HOM05D001283 ORTHO05D001109 4.9e-08 61.6 54 70.4
Os12g0572400 Oryza sativa ssp. japonica HOM05D001283 ORTHO05D001109 4.9e-08 61.6 54 70.4
AT3G55460 Arabidopsis thaliana HOM05D001283 ORTHO05D001109 6.3e-08 61.2 59 71.2
Cpa.g.sc1.413 Carica papaya HOM05D001283 ORTHO05D001109 6.3e-08 61.2 55 74.5
BcaB02g08419 Brassica carinata HOM05D001283 ORTHO05D001109 8.3e-08 60.8 54 75.9
HanXRQChr07g0201281 Helianthus annuus HOM05D001283 ORTHO05D001109 1.1e-07 60.5 55 61.8
FAN10G1208 Fragaria x ananassa HOM05D001719 ORTHO05D007646 1.4e-07 60.1 55 61.8
Cfa009701 Carpinus fangiana HOM05D001283 ORTHO05D125883 3.1e-07 58.9 41 73.2
DCAR_011710 Daucus carota HOM05D001283 ORTHO05D001109 3.1e-07 58.9 55 74.5
THA.LOC104810033 Tarenaya hassleriana HOM05D001283 ORTHO05D001109 3.1e-07 58.9 54 66.7
Ah.10g037220 Amaranthus hybridus HOM05D000046 ORTHO05D000195 7.0e-07 57.8 74 60.8
BcaB01g00098 Brassica carinata HOM05D001283 ORTHO05D001109 1.2e-06 57.0 54 72.2
ECA238G1861 Erigeron canadensis HOM05D001158 ORTHO05D000964 1.6e-06 56.6 55 76.4
Gohir.A06G167300 Gossypium hirsutum HOM05D001283 ORTHO05D001109 1.6e-06 56.6 54 66.7
Lalb_Chr04g0251251 Lupinus albus HOM05D001283 ORTHO05D001109 2.0e-06 56.2 65 66.2
Sabra08G0041100 Salix brachista HOM05D001719 ORTHO05D007646 2.7e-06 55.8 58 67.2
ATR0559G204 Amborella trichopoda HOM05D001283 ORTHO05D001109 3.5e-06 55.5 54 70.4
Ah.16g102360 Amaranthus hybridus HOM05D001719 ORTHO05D007646 7.7e-06 54.3 74 58.1


User provided reference genes

Program Settings