Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.1e-50 203.0 104 100.0
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 2.0e-47 192.2 104 94.2
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 5.8e-47 190.7 104 94.2
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 1.2e-44 183.0 104 87.5
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 3.0e-43 178.3 102 86.3
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 3.0e-43 178.3 102 86.3
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 2.6e-39 165.2 102 79.4
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 1.7e-38 162.5 102 79.4
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 1.7e-38 162.5 101 79.2
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 3.8e-38 161.4 103 80.6
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 3.8e-38 161.4 102 77.5
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 4.9e-38 161.0 102 78.4
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 8.4e-38 160.2 102 77.5
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.4e-37 159.5 102 76.5
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 2.4e-37 158.7 102 77.5
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 2.4e-37 158.7 102 78.4
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 3.2e-37 158.3 102 77.5
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 4.2e-37 157.9 102 76.5
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 4.2e-37 157.9 102 76.5
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 5.4e-37 157.5 102 76.5
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 5.4e-37 157.5 102 77.5
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 5.4e-37 157.5 102 74.5
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 5.4e-37 157.5 102 77.5
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 5.4e-37 157.5 102 75.5
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 5.4e-37 157.5 102 76.5
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 7.1e-37 157.1 97 79.4
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 9.3e-37 156.8 102 74.5
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 1.2e-36 156.4 102 76.5
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 1.2e-36 156.4 102 74.5
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 2.1e-36 155.6 104 73.1
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 2.1e-36 155.6 102 76.5
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.7e-36 155.2 102 75.5
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 3.5e-36 154.8 102 74.5
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 3.5e-36 154.8 102 74.5
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 3.5e-36 154.8 102 74.5
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 4.6e-36 154.5 101 75.2
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 4.6e-36 154.5 102 74.5
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 4.6e-36 154.5 102 75.5
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 6.0e-36 154.1 102 71.6
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 7.9e-36 153.7 102 73.5
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 7.9e-36 153.7 99 74.7
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.0e-35 153.3 102 75.5
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 1.0e-35 153.3 102 75.5
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 1.0e-35 153.3 97 77.3
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.0e-35 153.3 102 73.5
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 1.3e-35 152.9 102 73.5
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.8e-35 152.5 102 74.5
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 3.0e-35 151.8 99 72.7
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 3.0e-35 151.8 102 73.5
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 3.9e-35 151.4 102 73.5
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 3.9e-35 151.4 100 74.0
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 3.9e-35 151.4 99 73.7
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 3.9e-35 151.4 102 72.5
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 6.7e-35 150.6 102 72.5
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 1.1e-34 149.8 99 73.7
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 1.9e-34 149.1 102 71.6
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 1.9e-34 149.1 102 70.6
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 1.9e-34 149.1 97 75.3
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 1.9e-34 149.1 98 72.4
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 2.5e-34 148.7 99 72.7
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 2.5e-34 148.7 99 72.7
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 4.3e-34 147.9 102 70.6
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 4.3e-34 147.9 102 70.6
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 4.3e-34 147.9 102 70.6
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 4.3e-34 147.9 102 70.6
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 4.3e-34 147.9 103 75.7
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 4.3e-34 147.9 102 71.6
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 5.6e-34 147.5 103 69.9
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 5.6e-34 147.5 97 74.2
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 7.4e-34 147.1 102 69.6
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 7.4e-34 147.1 102 69.6
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 9.6e-34 146.7 102 70.6
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 9.6e-34 146.7 102 70.6
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.3e-33 146.4 102 71.6
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 1.6e-33 146.0 99 72.7
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 2.1e-33 145.6 99 71.7
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 2.1e-33 145.6 102 69.6
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 2.1e-33 145.6 102 70.6
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 3.7e-33 144.8 102 68.6
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 4.8e-33 144.4 102 69.6
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 6.2e-33 144.1 97 72.2
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 6.2e-33 144.1 102 68.6
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 8.1e-33 143.7 101 69.3
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 8.1e-33 143.7 102 69.6
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 8.1e-33 143.7 102 68.6
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 1.1e-32 143.3 102 68.6
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 1.1e-32 143.3 99 71.7
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 1.4e-32 142.9 97 71.1
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 1.4e-32 142.9 102 68.6
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 1.4e-32 142.9 102 68.6
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.4e-32 142.9 98 71.4
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.4e-32 142.9 98 71.4
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 1.8e-32 142.5 101 69.3
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 1.8e-32 142.5 102 69.6
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 2.4e-32 142.1 96 74.0
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 3.1e-32 141.7 102 66.7
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 3.1e-32 141.7 99 67.7
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 3.1e-32 141.7 97 71.1
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 4.0e-32 141.4 100 69.0
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 6.9e-32 140.6 96 70.8
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 6.9e-32 140.6 100 67.0
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 9.0e-32 140.2 102 65.7
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 1.2e-31 139.8 100 68.0
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.2e-31 139.8 100 68.0
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.2e-31 139.8 100 68.0
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 1.2e-31 139.8 100 67.0
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 1.2e-31 139.8 96 69.8
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 1.5e-31 139.4 99 67.7
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 1.5e-31 139.4 96 72.9
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 2.0e-31 139.0 97 70.1
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.4e-31 138.3 100 67.0
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 4.5e-31 137.9 101 67.3
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 7.6e-31 137.1 101 65.3
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 1.3e-30 136.3 99 66.7
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 1.7e-30 136.0 102 63.7
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 2.9e-30 135.2 102 63.7
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 3.8e-30 134.8 97 69.1
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 3.0e-27 125.2 94 68.1
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 3.9e-27 124.8 94 68.1
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 1.9e-26 122.5 94 67.0
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 7.4e-26 120.6 94 66.0
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 7.4e-26 120.6 94 66.0
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.1e-24 116.7 104 62.5
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.1e-24 114.8 103 62.1
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 1.0e-22 110.2 74 64.9
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 2.2e-22 109.0 73 67.1
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 5.0e-22 107.8 77 64.9
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 7.2e-21 104.0 160 40.0
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 1.6e-20 102.8 73 63.0
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.1e-20 102.4 88 61.4
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 2.1e-20 102.4 73 63.0
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 2.1e-20 102.4 68 67.6
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 7.9e-20 100.5 68 67.6
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 2.3e-19 99.0 70 62.9
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.9e-18 95.9 69 63.8
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 1.6e-17 92.8 87 56.3
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 1.8e-16 89.4 89 55.1
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 3.1e-16 88.6 102 50.0
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 6.9e-16 87.4 85 52.9
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 4.5e-15 84.7 61 68.9
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.7e-14 82.8 97 53.6
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 1.0e-11 73.6 83 49.4
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 9.7e-10 67.0 54 59.3
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 1.8e-08 62.8 61 45.9
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 9.1e-08 60.5 73 47.9
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 1.7e-06 56.2 85 43.5


User provided reference genes

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