Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 3.4e-86 321.6 161 100.0
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 5.6e-65 251.1 161 82.0
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 5.3e-47 191.4 104 94.2
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 9.0e-47 190.7 106 89.6
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 1.5e-46 189.9 104 91.3
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 3.8e-45 185.3 102 90.2
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 4.3e-41 171.8 102 82.4
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 2.8e-40 169.1 102 82.4
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 2.8e-40 169.1 101 82.2
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 4.8e-40 168.3 103 84.5
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 8.2e-40 167.5 102 81.4
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 8.2e-40 167.5 102 80.4
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 1.4e-39 166.8 102 80.4
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.8e-39 166.4 102 80.4
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 2.4e-39 166.0 104 79.8
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 3.1e-39 165.6 105 79.0
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 4.0e-39 165.2 102 81.4
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 5.3e-39 164.9 102 77.5
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 5.3e-39 164.9 102 80.4
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 6.9e-39 164.5 102 80.4
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 9.0e-39 164.1 105 78.1
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 9.0e-39 164.1 102 79.4
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 9.0e-39 164.1 97 82.5
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 9.0e-39 164.1 102 80.4
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 1.2e-38 163.7 102 79.4
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 1.2e-38 163.7 102 77.5
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 1.2e-38 163.7 102 78.4
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 1.5e-38 163.3 102 80.4
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 1.5e-38 163.3 102 78.4
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 3.4e-38 162.2 102 78.4
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 4.5e-38 161.8 106 75.5
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 4.5e-38 161.8 104 76.0
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 4.5e-38 161.8 102 78.4
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 4.5e-38 161.8 102 78.4
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 4.5e-38 161.8 102 78.4
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 4.5e-38 161.8 102 79.4
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 5.8e-38 161.4 102 76.5
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 7.6e-38 161.0 99 78.8
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 1.0e-37 160.6 97 81.4
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.0e-37 160.6 102 77.5
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.0e-37 160.6 102 78.4
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 1.3e-37 160.2 102 76.5
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 2.2e-37 159.5 102 76.5
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 2.2e-37 159.5 102 78.4
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 2.2e-37 159.5 102 78.4
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 2.9e-37 159.1 102 76.5
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 2.9e-37 159.1 107 72.9
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 3.8e-37 158.7 102 77.5
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 6.5e-37 157.9 104 75.0
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 6.5e-37 157.9 100 77.0
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 8.4e-37 157.5 102 76.5
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 8.4e-37 157.5 102 75.5
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 8.4e-37 157.5 102 76.5
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 8.4e-37 157.5 102 75.5
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 1.1e-36 157.1 98 77.6
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 1.4e-36 156.8 99 74.7
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 1.9e-36 156.4 97 79.4
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 2.5e-36 156.0 102 75.5
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 2.5e-36 156.0 102 74.5
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 4.2e-36 155.2 110 70.0
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 5.5e-36 154.8 111 69.4
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 9.3e-36 154.1 102 73.5
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 9.3e-36 154.1 102 73.5
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 9.3e-36 154.1 102 73.5
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 9.3e-36 154.1 102 73.5
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 1.2e-35 153.7 99 74.7
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 1.2e-35 153.7 99 74.7
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 1.6e-35 153.3 102 72.5
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 2.1e-35 152.9 102 73.5
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 2.1e-35 152.9 102 73.5
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 2.1e-35 152.9 102 74.5
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 2.7e-35 152.5 102 73.5
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 2.7e-35 152.5 97 76.3
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 4.6e-35 151.8 102 72.5
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 4.6e-35 151.8 99 75.8
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 4.6e-35 151.8 102 73.5
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 7.9e-35 151.0 103 77.7
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 1.0e-34 150.6 97 75.3
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 1.0e-34 150.6 99 73.7
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 1.0e-34 150.6 102 72.5
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 1.3e-34 150.2 102 71.6
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 1.3e-34 150.2 102 71.6
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.3e-34 150.2 98 75.5
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.3e-34 150.2 98 75.5
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 1.8e-34 149.8 101 72.3
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 1.8e-34 149.8 110 69.1
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 1.8e-34 149.8 99 74.7
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 2.3e-34 149.4 97 74.2
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 2.3e-34 149.4 102 71.6
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 2.3e-34 149.4 96 78.1
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 3.0e-34 149.1 102 71.6
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 3.0e-34 149.1 102 71.6
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 3.0e-34 149.1 99 71.7
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 3.0e-34 149.1 97 75.3
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 3.9e-34 148.7 101 72.3
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 3.9e-34 148.7 102 70.6
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 5.1e-34 148.3 100 73.0
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 5.1e-34 148.3 102 71.6
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 5.1e-34 148.3 102 70.6
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 6.7e-34 147.9 100 71.0
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 1.1e-33 147.1 96 74.0
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 1.1e-33 147.1 100 72.0
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.1e-33 147.1 100 72.0
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.1e-33 147.1 100 72.0
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 1.1e-33 147.1 102 69.6
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 1.1e-33 147.1 100 71.0
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 1.1e-33 147.1 96 74.0
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 1.9e-33 146.4 97 74.2
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 2.5e-33 146.0 99 70.7
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 2.5e-33 146.0 96 76.0
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.3e-33 145.6 100 71.0
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 1.3e-32 143.7 104 66.3
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.6e-32 143.3 101 69.3
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 2.2e-32 142.9 104 66.3
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 3.7e-32 142.1 97 73.2
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 6.3e-32 141.4 102 66.7
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 3.1e-31 139.0 102 65.7
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 5.0e-29 131.7 94 71.3
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 6.5e-29 131.3 94 71.3
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 3.2e-28 129.0 94 70.2
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 1.2e-27 127.1 94 69.1
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 1.2e-27 127.1 94 69.1
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.0e-26 124.0 104 66.3
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 3.9e-26 122.1 103 66.0
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 1.1e-25 120.6 74 71.6
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 4.8e-24 115.2 89 62.9
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 1.1e-23 114.0 73 69.9
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 3.4e-22 109.0 163 40.5
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 7.7e-22 107.8 73 65.8
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 7.7e-22 107.8 68 70.6
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 1.0e-21 107.5 73 65.8
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 1.7e-21 106.7 68 70.6
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 1.1e-20 104.0 70 65.7
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.4e-20 103.6 88 62.5
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.6e-19 100.1 69 65.2
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 1.8e-18 96.7 87 58.6
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 2.3e-18 96.3 102 53.9
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 1.5e-17 93.6 89 57.3
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.0e-17 93.2 85 55.3
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 9.7e-17 90.9 61 73.8
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.8e-15 86.7 97 55.7
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 3.2e-12 75.9 83 50.6
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.6e-11 73.6 54 64.8
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 3.0e-10 69.3 61 50.8
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 1.3e-08 63.9 74 50.0
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 2.2e-08 63.2 85 48.2
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 2.4e-07 59.7 89 40.4


User provided reference genes

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