Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 3.4e-50 201.4 106 100.0
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 1.3e-41 172.9 106 84.9
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 1.6e-39 166.0 106 79.2
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 2.0e-39 165.6 104 79.8
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 2.0e-39 165.6 104 79.8
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 5.9e-39 164.1 103 81.6
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 5.9e-39 164.1 103 81.6
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.0e-38 163.3 103 80.6
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 3.3e-37 158.3 104 76.0
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 3.3e-37 158.3 106 76.4
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 4.3e-37 157.9 106 77.4
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 7.3e-37 157.1 116 75.0
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 9.5e-37 156.8 103 76.7
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 9.5e-37 156.8 103 76.7
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 9.5e-37 156.8 107 76.6
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 9.5e-37 156.8 106 75.5
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 9.5e-37 156.8 106 75.5
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 1.6e-36 156.0 106 74.5
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.6e-36 156.0 106 74.5
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.6e-36 156.0 106 74.5
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 2.8e-36 155.2 106 74.5
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 3.6e-36 154.8 107 76.6
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 4.7e-36 154.5 105 71.4
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 4.7e-36 154.5 103 73.8
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 6.1e-36 154.1 106 72.6
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 8.0e-36 153.7 106 74.5
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 1.0e-35 153.3 103 75.7
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.4e-35 152.9 106 74.5
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 1.4e-35 152.9 106 74.5
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 1.8e-35 152.5 103 74.8
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 1.8e-35 152.5 106 72.6
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 1.8e-35 152.5 106 74.5
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.8e-35 152.5 106 74.5
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 2.3e-35 152.1 106 76.4
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 3.0e-35 151.8 102 72.5
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 3.0e-35 151.8 106 73.6
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 4.0e-35 151.4 108 75.9
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 4.0e-35 151.4 103 72.8
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 5.2e-35 151.0 103 72.8
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.2e-34 149.8 114 72.8
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.2e-34 149.8 106 72.6
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.2e-34 149.8 105 70.5
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 2.0e-34 149.1 103 71.8
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 3.4e-34 148.3 106 73.6
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 4.4e-34 147.9 105 69.5
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 5.7e-34 147.5 107 73.8
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 9.8e-34 146.7 103 73.8
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 9.8e-34 146.7 103 71.8
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 1.3e-33 146.4 103 71.8
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 1.3e-33 146.4 105 69.5
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.9e-33 145.2 127 63.8
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 3.7e-33 144.8 107 72.0
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 4.9e-33 144.4 119 68.1
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 8.3e-33 143.7 105 70.5
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 8.3e-33 143.7 108 68.5
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 1.4e-32 142.9 105 66.7
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 1.4e-32 142.9 107 69.2
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 1.4e-32 142.9 108 67.6
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.4e-32 142.9 107 70.1
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 3.2e-32 141.7 99 67.7
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 4.1e-32 141.4 107 68.2
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 5.4e-32 141.0 103 71.8
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 5.4e-32 141.0 103 71.8
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 5.4e-32 141.0 110 69.1
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 9.2e-32 140.2 107 69.2
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 2.0e-31 139.0 106 67.9
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 4.6e-31 137.9 93 78.5
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 5.9e-31 137.5 106 67.0
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 5.9e-31 137.5 107 65.4
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 5.9e-31 137.5 107 67.3
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 1.0e-30 136.7 106 66.0
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.7e-30 136.0 106 65.1
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 2.3e-30 135.6 106 68.9
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 2.3e-30 135.6 106 68.9
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 2.3e-30 135.6 107 68.2
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 3.0e-30 135.2 106 68.9
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 5.0e-30 134.4 87 72.4
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 6.6e-30 134.0 107 69.2
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 6.6e-30 134.0 106 66.0
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 6.6e-30 134.0 106 66.0
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 6.6e-30 134.0 106 66.0
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 6.6e-30 134.0 106 64.2
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 6.6e-30 134.0 93 75.3
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 6.6e-30 134.0 84 77.4
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 8.6e-30 133.7 96 68.8
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 8.6e-30 133.7 107 68.2
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 8.6e-30 133.7 92 78.3
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 8.6e-30 133.7 94 74.5
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.5e-29 132.9 102 66.7
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.5e-29 132.9 106 66.0
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.9e-29 132.5 106 64.2
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 1.9e-29 132.5 106 65.1
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 1.9e-29 132.5 107 62.6
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 2.5e-29 132.1 106 66.0
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 2.5e-29 132.1 106 66.0
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 3.3e-29 131.7 106 64.2
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 4.3e-29 131.3 106 66.0
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 4.3e-29 131.3 125 59.2
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 5.6e-29 131.0 106 64.2
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 7.3e-29 130.6 106 64.2
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 7.3e-29 130.6 106 64.2
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 9.5e-29 130.2 106 63.2
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 9.5e-29 130.2 107 64.5
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.1e-28 129.0 106 63.2
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 3.6e-28 128.3 96 64.6
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 4.7e-28 127.9 99 66.7
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 4.7e-28 127.9 106 64.2
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 6.2e-28 127.5 106 62.3
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 8.0e-28 127.1 74 93.2
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.0e-27 126.7 93 73.1
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 3.1e-27 125.2 95 62.1
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 5.2e-27 124.4 103 64.1
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.2e-26 123.2 105 62.9
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.5e-26 122.9 101 65.3
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 2.6e-26 122.1 104 61.5
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 5.8e-26 120.9 106 62.3
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 7.5e-26 120.6 106 64.2
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 1.7e-25 119.4 107 63.6
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.2e-25 119.0 99 65.7
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 6.4e-25 117.5 105 62.9
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 6.4e-25 117.5 106 59.4
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 1.4e-24 116.3 105 61.0
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.4e-24 116.3 105 61.9
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 3.2e-24 115.2 107 61.7
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 4.1e-24 114.8 107 61.7
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 3.5e-23 111.7 104 53.8
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.3e-22 109.8 86 64.0
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.7e-22 109.4 108 57.4
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 3.9e-22 108.2 108 57.4
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.5e-21 105.5 84 60.7
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 9.5e-21 103.6 74 75.7
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 5.2e-19 97.8 75 74.7
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 2.2e-17 92.4 74 66.2
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 6.4e-17 90.9 83 57.8
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 5.4e-16 87.8 59 76.3
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 2.1e-15 85.9 73 67.1
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 4.6e-15 84.7 64 70.3
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 6.0e-15 84.3 99 49.5
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.3e-14 82.4 76 63.2
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 5.1e-14 81.3 103 46.6
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 8.6e-14 80.5 51 78.4
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.5e-13 79.7 57 64.9
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.1e-12 75.9 85 57.6
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 1.2e-10 70.1 108 44.4
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 4.9e-09 64.7 68 50.0
Cfa013238 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.1e-08 63.5 37 83.8
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 3.2e-08 62.0 70 58.6
Solyc11g065610.1 Solanum lycopersicum HOM05D005271 ORTHO05D006072 2.3e-06 55.8 37 64.9
Sp1g13000 Schrenkiella parvula HOM05D005271 ORTHO05D006072 3.0e-06 55.5 34 73.5


User provided reference genes

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