Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.4e-162 576.2 304 100.0
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 4.2e-162 574.7 303 99.7
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 3.6e-145 518.5 304 90.5
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 2.3e-144 515.8 304 90.1
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 5.1e-144 514.6 303 89.8
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 5.1e-144 514.6 303 89.8
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 2.0e-140 502.7 304 87.8
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 4.2e-138 495.0 304 86.8
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.0e-136 490.3 304 85.9
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 3.1e-133 478.8 304 84.2
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 4.5e-132 474.9 295 85.4
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 1.3e-131 473.4 295 85.1
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 1.7e-131 473.0 301 83.7
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 1.7e-131 473.0 304 82.2
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 4.2e-130 468.4 299 83.6
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 2.1e-129 466.1 304 82.2
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.1e-129 466.1 301 81.4
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.7e-129 465.7 301 81.7
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 2.7e-129 465.7 301 82.1
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 3.6e-129 465.3 295 83.4
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 4.7e-129 464.9 295 84.4
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 6.1e-129 464.5 304 83.6
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 1.8e-128 463.0 304 81.2
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.3e-128 462.6 304 81.2
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 3.0e-128 462.2 290 84.1
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 6.7e-128 461.1 304 80.9
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 8.8e-128 460.7 304 81.9
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.0e-127 459.5 304 80.9
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 2.0e-127 459.5 299 81.9
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 2.0e-127 459.5 304 81.2
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 2.8e-126 455.7 304 79.9
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 3.7e-126 455.3 293 84.6
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 4.8e-126 454.9 305 81.0
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 4.8e-126 454.9 304 79.6
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 8.2e-126 454.1 295 84.1
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 1.1e-125 453.8 304 79.3
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.4e-125 453.4 304 78.9
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 1.8e-125 453.0 304 80.3
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 2.4e-125 452.6 295 83.7
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 7.0e-125 451.1 305 80.7
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 9.1e-125 450.7 304 78.9
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 9.1e-125 450.7 304 78.9
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 4.5e-124 448.4 295 80.0
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 1.3e-123 446.8 296 81.4
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 2.2e-123 446.0 297 80.5
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 2.2e-123 446.0 297 80.5
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 6.5e-123 444.5 301 80.1
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 6.5e-123 444.5 297 79.1
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 6.5e-123 444.5 297 79.1
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.5e-122 442.6 301 79.4
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.2e-122 442.2 293 82.6
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 4.2e-122 441.8 304 77.6
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.2e-121 440.3 293 82.3
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 2.1e-121 439.5 304 77.6
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 4.7e-121 438.3 293 80.9
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 1.0e-120 437.2 292 79.8
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.0e-120 437.2 295 79.7
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.8e-120 436.4 295 79.0
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 4.0e-120 435.3 290 81.0
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 6.8e-120 434.5 295 77.3
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.2e-119 433.7 293 79.5
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 2.0e-119 433.0 295 79.7
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 4.4e-119 431.8 304 76.3
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.3e-118 430.3 304 76.3
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.7e-118 429.9 295 75.6
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 2.2e-118 429.5 308 76.9
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.8e-118 429.1 295 75.3
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 3.7e-118 428.7 310 76.5
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 4.8e-118 428.3 309 76.4
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 1.1e-117 427.2 304 74.3
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 5.3e-117 424.9 304 74.3
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 5.3e-117 424.9 295 75.3
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 7.0e-117 424.5 304 74.7
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 9.1e-117 424.1 308 75.3
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 9.1e-117 424.1 295 74.6
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 9.1e-117 424.1 295 74.6
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.0e-116 422.9 304 75.0
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 3.5e-116 422.2 304 72.4
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 5.0e-115 418.3 295 73.9
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 2.5e-114 416.0 306 75.2
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 9.4e-114 414.1 281 81.9
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 1.6e-113 413.3 301 75.7
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 2.7e-113 412.5 301 75.1
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 1.0e-112 410.6 293 74.7
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.4e-112 410.2 295 74.2
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 8.8e-112 407.5 304 73.7
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 1.5e-111 406.8 304 74.3
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 1.5e-111 406.8 281 76.9
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 4.4e-111 405.2 281 77.6
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 4.4e-111 405.2 292 75.0
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 1.3e-110 403.7 304 70.7
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 2.8e-110 402.5 291 74.6
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 7.0e-109 397.9 281 79.4
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 4.5e-108 395.2 304 70.7
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 3.3e-106 389.0 304 66.4
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 7.2e-106 387.9 298 69.8
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 2.8e-105 386.0 298 70.1
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 2.3e-104 382.9 299 67.9
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 1.2e-103 380.6 296 69.9
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 3.7e-102 375.6 292 68.2
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.8e-101 373.2 298 67.1
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.0e-100 369.8 302 64.2
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 1.5e-95 353.6 290 64.8
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 2.9e-94 349.4 273 70.3
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 3.7e-94 349.0 281 66.9
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 1.9e-90 336.7 295 65.4
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 6.8e-88 328.2 272 66.9
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.7e-86 323.6 227 78.0
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 7.3e-82 308.1 195 85.6
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.4e-77 293.9 195 82.6
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.0e-75 287.7 306 54.2
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 3.0e-67 259.6 163 81.6
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 3.4e-63 246.1 295 48.8
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 2.9e-62 243.0 159 81.8
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 3.2e-61 239.6 292 52.1
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 4.6e-60 235.7 195 66.7
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 6.6e-59 231.9 291 47.8
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.3e-57 227.6 139 85.6
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 2.8e-57 226.5 347 42.4
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.1e-56 224.6 194 61.3
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 3.9e-51 206.1 238 55.0
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 1.6e-49 200.7 142 73.2
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 5.7e-42 175.6 115 84.3
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 2.8e-41 173.3 202 51.0
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 1.1e-40 171.4 186 56.5
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 3.9e-35 152.9 111 73.0
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 9.7e-34 148.3 295 38.0
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.8e-33 146.7 90 80.0
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.5e-31 139.4 97 81.4
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 7.2e-29 132.1 182 41.8
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 3.2e-21 106.7 86 67.4
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 3.9e-19 99.8 98 62.2
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 7.4e-18 95.5 294 29.6
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 2.2e-17 94.0 303 28.7
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 4.1e-16 89.7 60 76.7
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 2.0e-15 87.4 81 55.6
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.0e-14 85.1 150 40.0
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 3.8e-14 83.2 48 81.2
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 7.2e-13 79.0 175 36.0
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 7.0e-08 62.4 57 63.2


User provided reference genes

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