Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 1.2e-118 429.9 219 100.0
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 7.3e-100 367.5 217 88.5
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.4e-74 283.5 218 68.3
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 2.1e-70 269.6 199 65.3
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 7.4e-68 261.2 209 61.7
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.0e-64 250.8 216 58.3
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 1.3e-64 250.4 199 63.3
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 1.7e-64 250.0 219 61.2
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 1.7e-64 250.0 216 57.9
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 8.4e-64 247.7 194 63.9
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 8.4e-64 247.7 189 63.5
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 1.1e-63 247.3 214 59.8
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.5e-63 246.1 216 57.4
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 3.2e-63 245.7 216 56.9
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 7.9e-62 241.1 194 61.3
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 1.3e-61 240.4 208 55.8
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.0e-61 239.2 219 55.7
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 5.1e-61 238.4 197 61.4
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 1.1e-60 237.3 203 59.6
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.5e-60 236.9 198 61.6
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 1.9e-60 236.5 203 58.6
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 2.5e-60 236.1 207 54.1
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 4.3e-60 235.3 214 57.5
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 5.7e-60 235.0 222 59.0
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 5.7e-60 235.0 210 57.6
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 7.4e-60 234.6 179 62.0
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 3.7e-59 232.3 193 61.7
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 1.4e-58 230.3 211 54.5
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 3.1e-58 229.2 216 54.6
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 5.3e-58 228.4 297 47.8
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 6.9e-58 228.0 189 59.8
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 2.0e-57 226.5 205 57.6
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 5.9e-57 224.9 208 55.8
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 2.9e-56 222.6 216 52.8
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 1.4e-55 220.3 215 55.8
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 4.2e-55 218.8 213 54.5
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 2.7e-54 216.1 210 53.8
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 7.9e-54 214.5 195 55.4
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 7.9e-54 214.5 217 49.8
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 2.3e-53 213.0 212 54.2
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 3.0e-53 212.6 212 54.2
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 3.9e-53 212.2 209 49.3
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 5.1e-53 211.8 196 53.6
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 6.7e-53 211.5 213 52.6
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 1.5e-52 210.3 208 52.9
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 5.7e-52 208.4 213 50.2
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 9.7e-52 207.6 200 52.0
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 1.6e-51 206.8 213 47.9
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 2.8e-51 206.1 202 53.0
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 3.7e-51 205.7 215 51.6
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 6.3e-51 204.9 208 50.5
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 8.2e-51 204.5 202 52.5
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 8.2e-51 204.5 198 47.5
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 3.1e-50 202.6 221 48.4
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 1.2e-49 200.7 201 54.2
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 1.5e-49 200.3 181 55.8
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 2.0e-49 199.9 213 49.3
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 3.4e-49 199.1 209 51.7
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 1.0e-48 197.6 191 52.9
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 1.0e-48 197.6 199 46.2
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 1.0e-48 197.6 204 49.5
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 1.7e-48 196.8 204 49.0
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 2.2e-48 196.4 205 50.2
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 2.2e-48 196.4 204 50.5
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 2.2e-48 196.4 209 52.6
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 3.8e-48 195.7 212 50.0
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 8.5e-48 194.5 201 52.7
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 1.9e-47 193.4 205 51.7
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 1.2e-46 190.7 205 47.3
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 6.1e-46 188.3 200 51.0
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 1.4e-45 187.2 219 48.4
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 5.1e-45 185.3 207 48.3
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 1.5e-44 183.7 198 43.9
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 2.6e-44 183.0 185 54.6
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 5.7e-44 181.8 224 44.6
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 2.2e-43 179.9 211 45.0
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 4.8e-43 178.7 205 46.8
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 6.3e-43 178.3 231 46.8
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 1.4e-42 177.2 228 45.2
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.4e-42 177.2 208 48.6
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 1.8e-42 176.8 218 44.5
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 3.1e-42 176.0 218 45.0
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 5.3e-42 175.3 208 45.2
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 5.3e-42 175.3 208 45.2
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 6.9e-42 174.9 218 44.0
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.5e-41 173.7 175 53.7
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 1.5e-41 173.7 192 48.4
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 2.6e-41 172.9 220 44.1
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 2.6e-41 172.9 221 44.8
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 2.6e-41 172.9 220 44.1
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 2.6e-41 172.9 175 53.7
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 4.5e-41 172.2 220 44.1
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 5.9e-41 171.8 221 44.3
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 3.8e-40 169.1 219 43.8
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 6.5e-40 168.3 215 44.2
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 1.9e-39 166.8 218 43.1
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 5.5e-39 165.2 184 46.7
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 4.8e-35 152.1 147 55.8
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 8.5e-32 141.4 155 51.6
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 2.5e-31 139.8 119 53.8
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 6.7e-29 131.7 215 34.9
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 5.7e-28 128.6 195 40.5
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 4.8e-27 125.6 120 49.2
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 4.5e-25 119.0 203 37.4
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 7.7e-25 118.2 106 50.0
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 7.7e-25 118.2 85 63.5
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 1.7e-24 117.1 182 40.7
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 2.2e-24 116.7 109 49.5
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 8.5e-24 114.8 191 38.7
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 4.2e-23 112.5 191 38.2
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 3.6e-22 109.4 151 41.7
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 6.1e-22 108.6 193 34.7
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 2.3e-21 106.7 84 56.0
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 1.5e-20 104.0 58 87.9
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 4.7e-14 82.4 89 48.3
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 7.5e-12 75.1 130 36.2
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 3.5e-09 66.2 69 50.7
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 1.7e-08 63.9 53 50.9
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 6.6e-08 62.0 59 47.5


User provided reference genes

Program Settings