Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000936 Carpinus fangiana HOM05D007598 ORTHO05D009632 3.4e-40 167.9 88 100.0
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 9.0e-25 116.7 91 74.7
Manes.17G070801 Manihot esculenta HOM05D007598 ORTHO05D009632 6.5e-23 110.5 92 70.7
Thecc.06G149600 Theobroma cacao HOM05D007598 ORTHO05D009632 1.1e-22 109.8 88 68.2
Prupe.4G081500 Prunus persica HOM05D007598 ORTHO05D009632 2.5e-22 108.6 89 69.7
Actinidia07703 Actinidia chinensis HOM05D007598 ORTHO05D009632 3.5e-21 104.8 88 65.9
Cpa.g.sc170.27 Carica papaya HOM05D007598 ORTHO05D009632 6.1e-21 104.0 89 69.7
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 7.9e-21 103.6 88 67.0
Actinidia39580 Actinidia chinensis HOM05D007598 ORTHO05D009632 1.0e-20 103.2 81 67.9
Sed0007826 Sechium edule HOM05D007598 ORTHO05D009632 1.0e-20 103.2 85 67.1
RcHm_v2.0_Chr5g0014281 Rosa chinensis HOM05D007598 ORTHO05D009632 1.3e-20 102.8 62 82.3
DCAR_027909 Daucus carota HOM05D007598 ORTHO05D009632 2.3e-20 102.1 81 67.9
Rhsim02G0159000 Rhododendron simsii HOM05D007598 ORTHO05D009632 2.3e-20 102.1 90 60.0
AUR62030196 Chenopodium quinoa HOM05D007598 ORTHO05D009632 3.0e-20 101.7 85 62.4
arahy.Tifrunner.gnm1.ann1.A3G0A3 Arachis hypogaea HOM05D007598 ORTHO05D009632 5.1e-20 100.9 88 67.0
CsaV3_6G051780 Cucumis sativus L. HOM05D007598 ORTHO05D009632 5.1e-20 100.9 88 64.8
Atru.chr10.1775 Acer truncatum HOM05D007598 ORTHO05D009632 6.7e-20 100.5 82 68.3
ClCG01G024670 Citrullus lanatus HOM05D007598 ORTHO05D009632 6.7e-20 100.5 87 64.4
QL05p057697 Quercus lobata HOM05D007598 ORTHO05D009632 8.7e-20 100.1 83 74.7
AUR62002748 Chenopodium quinoa HOM05D007598 ORTHO05D009632 1.1e-19 99.8 85 61.2
Phvul.006G165400 Phaseolus vulgaris HOM05D007598 ORTHO05D009632 1.1e-19 99.8 88 65.9
FvH4_3g05470 Fragaria vesca HOM05D007598 ORTHO05D009632 1.5e-19 99.4 62 83.9
FAN11G3574 Fragaria x ananassa HOM05D007598 ORTHO05D009632 1.5e-19 99.4 80 70.0
Gohir.D10G042400 Gossypium hirsutum HOM05D007598 ORTHO05D009632 1.5e-19 99.4 65 78.5
MD05G1283100 Malus domestica HOM05D007598 ORTHO05D009632 1.5e-19 99.4 95 64.2
Aa31LG10G6810 Aethionema arabicum HOM05D007598 ORTHO05D009632 1.9e-19 99.0 84 65.5
arahy.Tifrunner.gnm1.ann1.KTXA2U Arachis hypogaea HOM05D007598 ORTHO05D009632 1.9e-19 99.0 88 65.9
Glyma.15G093500 Glycine max HOM05D007598 ORTHO05D009632 2.5e-19 98.6 88 65.9
Sabra11G0066800 Salix brachista HOM05D007598 ORTHO05D009632 2.5e-19 98.6 92 59.8
MD10G1261400 Malus domestica HOM05D007598 ORTHO05D009632 3.3e-19 98.2 90 63.3
AT2G34585 Arabidopsis thaliana HOM05D007598 ORTHO05D009632 4.3e-19 97.8 80 65.0
FAN16G2639 Fragaria x ananassa HOM05D007598 ORTHO05D009632 4.3e-19 97.8 62 82.3
FAN21G2813 Fragaria x ananassa HOM05D007598 ORTHO05D009632 4.3e-19 97.8 62 82.3
Lalb_Chr20g0117881 Lupinus albus HOM05D007598 ORTHO05D009632 9.7e-19 96.7 61 78.7
Medtr2g019240 Medicago truncatula HOM05D007598 ORTHO05D009632 9.7e-19 96.7 70 68.6
Carub.0004s1626 Capsella rubella HOM05D007598 ORTHO05D009632 1.3e-18 96.3 93 59.1
Glyma.13G218700 Glycine max HOM05D007598 ORTHO05D009632 1.3e-18 96.3 69 72.5
Thhalv10017600m.g Eutrema salsugineum HOM05D007598 ORTHO05D009632 1.6e-18 95.9 91 60.4
FAN25G0892 Fragaria x ananassa HOM05D007598 ORTHO05D009632 1.6e-18 95.9 62 80.6
Nn3g20182 Nelumbo nucifera HOM05D007598 ORTHO05D009632 1.6e-18 95.9 80 63.8
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 2.2e-18 95.5 84 60.7
Psat1g188680 Pisum sativum HOM05D007598 ORTHO05D009632 2.2e-18 95.5 82 63.4
Potri.011G084300 Populus trichocarpa HOM05D007598 ORTHO05D009632 2.2e-18 95.5 60 80.0
CSS0006536 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 3.7e-18 94.7 60 80.0
CSS0035986 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 3.7e-18 94.7 60 80.0
Ca_00537_v3 Cicer arietinum L. HOM05D007598 ORTHO05D009632 4.8e-18 94.4 60 78.3
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 4.8e-18 94.4 64 73.4
Lj6g0001552 Lotus japonicus HOM05D007598 ORTHO05D009632 4.8e-18 94.4 87 62.1
EL10Ac8g19673 Beta vulgaris HOM05D007598 ORTHO05D009632 6.3e-18 94.0 64 71.9
CARHR128680 Cardamine hirsuta HOM05D007598 ORTHO05D009632 6.3e-18 94.0 80 63.8
THA.LOC104820651 Tarenaya hassleriana HOM05D007598 ORTHO05D009632 6.3e-18 94.0 90 62.2
AL4G30560 Arabidopsis lyrata HOM05D007598 ORTHO05D009632 8.2e-18 93.6 79 64.6
Duzib235G0096 Durio zibethinus HOM05D007598 ORTHO05D009632 8.2e-18 93.6 64 78.1
Aqoxy7G00246 Aquilegia oxysepala HOM05D007598 ORTHO05D009632 2.4e-17 92.0 64 71.9
Nitab4.5_0006887g0010 Nicotiana tabacum HOM05D007598 ORTHO05D009632 2.4e-17 92.0 60 73.3
Ah.14g086510 Amaranthus hybridus HOM05D007598 ORTHO05D009632 3.1e-17 91.7 81 61.7
TWI53G0871 Tripterygium wilfordii HOM05D007598 ORTHO05D009632 4.1e-17 91.3 90 64.4
CANSAT35G0825 Cannabis sativa HOM05D007598 ORTHO05D009632 5.3e-17 90.9 92 58.7
Cc00_g10360 Coffea canephora HOM05D007598 ORTHO05D009632 5.3e-17 90.9 88 61.4
PGR042G1521 Punica granatum HOM05D007598 ORTHO05D009632 5.3e-17 90.9 83 60.2
CAN.G702.32 Capsicum annuum HOM05D007598 ORTHO05D009632 9.0e-17 90.1 60 71.7
BcaB06g28784 Brassica carinata HOM05D007598 ORTHO05D009632 1.2e-16 89.7 91 58.2
PSO541G2526 Papaver somniferum HOM05D007598 ORTHO05D009632 1.2e-16 89.7 79 59.5
Sp4g16850 Schrenkiella parvula HOM05D007598 ORTHO05D009632 1.2e-16 89.7 91 59.3
Sc05g0006160 Simmondsia chinensis HOM05D007598 ORTHO05D009632 1.5e-16 89.4 67 65.7
Rhsim13G0114100 Rhododendron simsii HOM05D007598 ORTHO05D009632 2.6e-16 88.6 82 56.1
A04p26490 Brassica napus HOM05D007598 ORTHO05D009632 3.4e-16 88.2 92 57.6
C04p63910 Brassica napus HOM05D007598 ORTHO05D009632 3.4e-16 88.2 92 57.6
BolC4t27858H Brassica oleracea HOM05D007598 ORTHO05D009632 3.4e-16 88.2 92 57.6
BraA04t18153Z Brassica rapa HOM05D007598 ORTHO05D009632 3.4e-16 88.2 92 57.6
SalBow8G5536 Salvia bowleyana HOM05D007598 ORTHO05D009632 3.4e-16 88.2 62 69.4
HanXRQChr04g0114301 Helianthus annuus HOM05D007598 ORTHO05D009632 5.9e-16 87.4 88 56.8
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 5.9e-16 87.4 62 67.7
Lsat_1_v5_gn_7_28481 Lactuca sativa HOM05D007598 ORTHO05D009632 7.7e-16 87.0 60 71.7
Nitab4.5_0002744g0030 Nicotiana tabacum HOM05D007598 ORTHO05D009632 1.0e-15 86.7 88 60.2
PGSC0003DMG400021093 Solanum tuberosum HOM05D007598 ORTHO05D009632 1.0e-15 86.7 88 56.8
Ciclev10017916m.g Citrus clementina HOM05D007598 ORTHO05D009632 1.7e-15 85.9 62 74.2
HanXRQChr15g0480881 Helianthus annuus HOM05D007598 ORTHO05D009632 6.5e-15 84.0 88 56.8
Solyc02g070470.1 Solanum lycopersicum HOM05D007598 ORTHO05D009632 8.5e-15 83.6 90 60.0
COL.COLO4_31062 Corchorus olitorius HOM05D007598 ORTHO05D009632 1.1e-14 83.2 46 87.0
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 1.1e-14 83.2 59 69.5
Sopen02g019560 Solanum pennellii HOM05D007598 ORTHO05D009632 1.4e-14 82.8 88 58.0
Migut.M01992 Erythranthe guttata HOM05D007598 ORTHO05D009632 1.9e-14 82.4 59 67.8
Migut.M00903 Erythranthe guttata HOM05D007598 ORTHO05D009632 3.2e-14 81.6 59 67.8
unitig_749.g13736 Utricularia gibba HOM05D007598 ORTHO05D009632 3.2e-14 81.6 58 70.7
ECA236G0778 Erigeron canadensis HOM05D007598 ORTHO05D009632 1.6e-13 79.3 46 80.4
ATR1098G093 Amborella trichopoda HOM05D007598 ORTHO05D009632 4.6e-13 77.8 66 59.1
HPP92_000988 Vanilla planifolia HOM05D007598 ORTHO05D009632 4.6e-13 77.8 47 78.7
Os07g0154300 Oryza sativa ssp. japonica HOM05D007598 ORTHO05D009632 6.1e-13 77.4 56 64.3
SEGI_36626 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 3.0e-12 75.1 48 70.8
PGSC0003DMG400012092 Solanum tuberosum HOM05D007598 ORTHO05D009632 5.1e-12 74.3 48 70.8
Mapoly0055s0099 Marchantia polymorpha HOM05D007598 ORTHO05D009632 1.1e-11 73.2 50 64.0
Zm00001eb117510 Zea mays HOM05D007598 ORTHO05D009632 1.1e-11 73.2 88 51.1
Pp3c14_11250 Physcomitrium patens HOM05D007598 ORTHO05D009632 4.1e-09 64.7 67 46.3
Actinidia16706 Actinidia chinensis HOM05D000667 ORTHO05D004096 2.6e-08 62.0 59 61.0
SEGI_00564 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 1.1e-06 56.6 49 49.0
Pp3c10_22390 Physcomitrium patens HOM05D007598 ORTHO05D009632 4.2e-06 54.7 46 52.2


User provided reference genes

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