Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 1.2e-191 672.9 321 100.0
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 1.6e-172 609.4 354 85.0
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 9.2e-160 567.0 321 83.2
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 3.1e-147 525.4 326 78.8
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 7.6e-138 494.2 319 75.2
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 2.3e-134 482.6 321 71.7
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.1e-132 476.1 319 70.8
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.8e-132 475.7 321 73.2
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 3.6e-132 475.3 319 71.2
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 6.2e-132 474.6 321 71.3
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 8.1e-132 474.2 319 71.5
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 6.9e-131 471.1 321 72.6
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.2e-130 470.3 321 72.6
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 1.5e-130 469.9 320 73.8
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 3.4e-130 468.8 319 72.4
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 2.9e-129 465.7 321 71.0
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 1.1e-128 463.8 322 70.2
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 2.4e-128 462.6 321 70.7
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 5.4e-128 461.5 319 72.7
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 5.4e-128 461.5 322 71.4
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 2.1e-127 459.5 319 68.7
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 2.7e-127 459.1 320 68.8
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 6.0e-127 458.0 323 68.1
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 1.8e-126 456.4 323 70.0
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 2.3e-126 456.1 321 67.9
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 3.9e-126 455.3 337 66.8
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 6.7e-126 454.5 321 67.6
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 4.3e-125 451.8 321 68.8
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 8.1e-124 447.6 324 66.4
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 6.9e-123 444.5 319 66.1
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 1.5e-122 443.4 319 69.3
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 7.6e-122 441.0 321 68.2
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 1.7e-121 439.9 321 67.0
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 2.2e-121 439.5 321 65.7
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 6.4e-121 438.0 319 65.8
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.4e-120 436.8 322 66.1
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 1.4e-120 436.8 323 66.6
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 1.9e-120 436.4 319 67.7
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 4.2e-120 435.3 322 66.5
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 5.5e-120 434.9 322 66.1
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 9.3e-120 434.1 326 65.0
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.2e-119 433.7 319 64.9
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 1.6e-119 433.3 322 65.2
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 7.9e-119 431.0 319 64.9
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 7.9e-119 431.0 322 66.1
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 5.1e-118 428.3 319 65.5
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 1.5e-117 426.8 319 63.9
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 1.5e-117 426.8 328 64.9
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.8e-116 422.5 277 76.2
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 3.7e-116 422.2 321 65.1
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 4.8e-116 421.8 319 63.0
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 1.1e-115 420.6 320 64.4
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 1.4e-115 420.2 322 64.3
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 1.4e-115 420.2 321 64.5
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 1.4e-115 420.2 321 63.6
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 4.0e-115 418.7 321 63.2
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 5.3e-115 418.3 319 63.3
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 3.4e-114 415.6 321 64.2
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 3.4e-114 415.6 321 64.2
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 3.4e-114 415.6 321 64.8
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 5.8e-114 414.8 324 63.3
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 5.8e-114 414.8 321 63.2
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 7.6e-114 414.5 321 64.5
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 1.0e-113 414.1 321 64.2
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 2.9e-113 412.5 321 64.5
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 3.8e-113 412.1 322 63.7
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 4.9e-113 411.8 321 63.2
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 8.4e-113 411.0 321 63.9
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 1.1e-112 410.6 329 62.6
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 1.9e-112 409.8 321 63.9
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 5.5e-112 408.3 372 57.0
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 4.6e-111 405.2 281 65.5
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.1e-109 400.6 327 61.8
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 3.3e-109 399.1 328 60.7
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 3.3e-109 399.1 319 62.4
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 5.7e-109 398.3 318 61.0
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 1.3e-108 397.1 326 60.1
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 2.2e-108 396.4 321 62.6
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 6.3e-108 394.8 326 60.1
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 2.4e-107 392.9 321 61.7
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.0e-105 387.5 321 62.9
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 1.8e-102 376.7 243 77.0
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 1.1e-101 374.0 258 70.2
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.0e-101 373.2 321 59.5
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 1.0e-97 360.9 332 54.5
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.4e-96 357.1 326 57.4
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 4.2e-96 355.5 222 73.0
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 5.5e-96 355.1 260 68.1
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 2.1e-95 353.2 336 55.7
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 5.1e-94 348.6 243 71.6
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 1.8e-91 340.1 336 55.1
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 2.9e-89 332.8 329 54.1
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.4e-88 330.5 324 54.9
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 2.5e-88 329.7 321 56.7
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 7.2e-88 328.2 247 63.2
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 6.5e-81 305.1 234 64.5
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 8.8e-78 294.7 329 48.6
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 2.6e-77 293.1 273 52.0
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 1.1e-75 287.7 255 58.8
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 1.8e-75 287.0 250 54.8
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 4.1e-75 285.8 324 51.2
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.2e-74 284.3 188 71.8
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 1.2e-74 284.3 329 49.8
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 1.7e-73 280.4 277 52.0
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 2.9e-73 279.6 318 46.9
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 4.0e-70 269.2 230 57.4
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 5.9e-66 255.4 176 73.9
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.3e-65 254.2 216 55.6
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 2.3e-65 253.4 176 72.7
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 1.9e-64 250.4 156 72.4
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 2.9e-57 226.5 162 67.9
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 6.8e-54 215.3 126 77.8
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 4.4e-53 212.6 321 39.3
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.3e-52 211.1 144 66.7
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.7e-49 200.7 227 47.1
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 1.4e-43 181.0 149 64.4
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 4.1e-43 179.5 142 56.3
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 1.1e-40 171.4 420 30.7
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 1.1e-40 171.4 298 37.9
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 1.1e-38 164.9 106 70.8
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 1.5e-37 161.0 236 40.3
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 9.9e-37 158.3 253 38.3
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.4e-29 133.3 175 43.4
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 1.6e-23 114.4 61 82.0
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 1.9e-19 100.9 67 65.7
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 4.2e-19 99.8 53 83.0
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 2.7e-18 97.1 59 67.8
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 7.3e-16 89.0 51 78.4
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.6e-13 80.5 45 77.8
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 6.4e-12 75.9 43 69.8
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 8.7e-09 65.5 31 90.3
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 7.4e-08 62.4 40 72.5
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 9.6e-08 62.0 36 72.2
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 2.4e-06 57.4 42 61.9


User provided reference genes

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