Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000927 Carpinus fangiana HOM05D007074 ORTHO05D008542 1.4e-122 443.0 232 100.0
QL05p057294 Quercus lobata HOM05D007074 ORTHO05D008542 4.6e-44 182.2 241 54.4
Prupe.4G082900 Prunus persica HOM05D007074 ORTHO05D008542 9.6e-42 174.5 246 51.6
CiPaw.10G090600 Carya illinoinensis HOM05D007074 ORTHO05D008542 2.4e-40 169.9 251 53.0
CiPaw.09G122000 Carya illinoinensis HOM05D007074 ORTHO05D008542 1.2e-39 167.5 263 49.8
Thecc.06G148300 Theobroma cacao HOM05D007074 ORTHO05D008542 4.5e-39 165.6 276 48.2
MD05G1281700 Malus domestica HOM05D007074 ORTHO05D008542 1.9e-37 160.2 246 50.0
MD10G1260500 Malus domestica HOM05D007074 ORTHO05D008542 4.6e-36 155.6 250 49.2
Duzib235G1065 Durio zibethinus HOM05D007074 ORTHO05D008542 5.1e-35 152.1 280 45.4
Manes.17G071900 Manihot esculenta HOM05D007074 ORTHO05D008542 5.6e-34 148.7 257 46.7
Manes.15G123200 Manihot esculenta HOM05D007074 ORTHO05D008542 1.7e-30 137.1 250 44.4
COL.COLO4_31042 Corchorus olitorius HOM05D007074 ORTHO05D008542 4.9e-30 135.6 240 46.2
Hma1.2p1_0020F.1_g014170 Hydrangea macrophylla HOM05D007074 ORTHO05D008542 2.5e-29 133.3 198 50.0
Ciclev10017572m.g Citrus clementina HOM05D007074 ORTHO05D008542 5.5e-29 132.1 267 42.3
Gohir.A05G147500 Gossypium hirsutum HOM05D007074 ORTHO05D008542 5.5e-29 132.1 285 42.1
TWI53G1156 Tripterygium wilfordii HOM05D007074 ORTHO05D008542 5.5e-29 132.1 214 48.6
Gorai.009G154100 Gossypium raimondii HOM05D007074 ORTHO05D008542 7.1e-29 131.7 280 41.8
Gohir.D05G150000 Gossypium hirsutum HOM05D007074 ORTHO05D008542 9.3e-29 131.3 281 42.7
Medtr2g019160 Medicago truncatula HOM05D007074 ORTHO05D008542 1.2e-28 131.0 269 44.6
Psat1g191080 Pisum sativum HOM05D007074 ORTHO05D008542 3.0e-27 126.3 269 42.8
Lalb_Chr20g0117821 Lupinus albus HOM05D007074 ORTHO05D008542 1.1e-26 124.4 293 37.9
Psat1g191160 Pisum sativum HOM05D007074 ORTHO05D008542 2.5e-26 123.2 262 42.4
TWI73G0984 Tripterygium wilfordii HOM05D007074 ORTHO05D008542 2.5e-26 123.2 240 41.7
TPR.G26250 Trifolium pratense HOM05D007074 ORTHO05D008542 4.3e-26 122.5 271 41.3
Gorai.010G167100 Gossypium raimondii HOM05D007074 ORTHO05D008542 1.3e-25 120.9 229 41.0
Potri.004G065300 Populus trichocarpa HOM05D007074 ORTHO05D008542 6.3e-25 118.6 258 41.9
Oeu034132.1 Olea europaea HOM05D007074 ORTHO05D008542 1.4e-24 117.5 252 40.5
Gohir.D06G143401 Gossypium hirsutum HOM05D007074 ORTHO05D008542 4.1e-24 115.9 199 42.7
Glyma.15G092900 Glycine max HOM05D007074 ORTHO05D008542 5.3e-24 115.5 256 41.0
FAN25G3808 Fragaria x ananassa HOM05D007074 ORTHO05D008542 1.2e-23 114.4 262 42.7
FAN21G0051 Fragaria x ananassa HOM05D007074 ORTHO05D008542 2.0e-23 113.6 261 40.6
Glyma.13G219300 Glycine max HOM05D007074 ORTHO05D008542 2.0e-23 113.6 260 40.4
Gohir.A06G138601 Gossypium hirsutum HOM05D007074 ORTHO05D008542 2.0e-23 113.6 198 41.9
FAN16G0984 Fragaria x ananassa HOM05D007074 ORTHO05D008542 1.0e-22 111.3 260 40.8
Haze_05622 Corylus avellana HOM05D007074 ORTHO05D008542 1.3e-22 110.9 98 69.4
Dinv05217 Davidia involucrata HOM05D007074 ORTHO05D008542 3.8e-22 109.4 137 54.7
Cfa000926 Carpinus fangiana HOM05D007074 ORTHO05D008542 6.5e-22 108.6 98 67.3
Gohir.D10G043000 Gossypium hirsutum HOM05D007074 ORTHO05D008542 8.5e-22 108.2 229 40.6
PGR031G2887 Punica granatum HOM05D007074 ORTHO05D008542 8.5e-22 108.2 233 37.3
Gorai.011G045600 Gossypium raimondii HOM05D007074 ORTHO05D008542 1.1e-21 107.8 229 40.6
Gohir.A10G042100 Gossypium hirsutum HOM05D007074 ORTHO05D008542 5.5e-21 105.5 235 40.4
Atru.chr10.1177 Acer truncatum HOM05D007074 ORTHO05D008542 7.2e-21 105.1 244 37.7
Nn4g26598 Nelumbo nucifera HOM05D007074 ORTHO05D008542 9.4e-21 104.8 227 41.0
Eucgr.E02421 Eucalyptus grandis HOM05D007074 ORTHO05D008542 1.6e-20 104.0 241 39.4
Phvul.006G166000 Phaseolus vulgaris HOM05D007074 ORTHO05D008542 3.0e-19 99.8 243 39.1
SGA_v2.0_scaffold1478G53958 Striga asiatica HOM05D007074 ORTHO05D008542 3.9e-19 99.4 229 40.2
SGA_v2.0_scaffold1G00191 Striga asiatica HOM05D007074 ORTHO05D008542 3.9e-19 99.4 229 40.2
FvH4_3g05300 Fragaria vesca HOM05D007074 ORTHO05D008542 5.1e-19 99.0 254 39.4
Migut.M00897 Erythranthe guttata HOM05D007074 ORTHO05D008542 8.8e-19 98.2 242 38.4
CsaV3_1G032390 Cucumis sativus L. HOM05D007074 ORTHO05D008542 1.9e-18 97.1 200 39.5
THA.LOC104814307 Tarenaya hassleriana HOM05D007074 ORTHO05D008542 2.5e-18 96.7 284 35.9
MELO3C002739.2 Cucumis melo HOM05D007074 ORTHO05D008542 7.4e-18 95.1 198 40.4
PGSC0003DMG400021166 Solanum tuberosum HOM05D007074 ORTHO05D008542 7.4e-18 95.1 240 39.2
arahy.Tifrunner.gnm1.ann1.4BL86F Arachis hypogaea HOM05D007074 ORTHO05D008542 4.1e-16 89.4 195 40.5
Nn3g20397 Nelumbo nucifera HOM05D007074 ORTHO05D008542 4.1e-16 89.4 259 32.8
Sed0013579 Sechium edule HOM05D007074 ORTHO05D008542 9.1e-16 88.2 233 36.9
Lalb_Chr18g0055351 Lupinus albus HOM05D007074 ORTHO05D008542 1.2e-15 87.8 242 35.5
AL1G44090 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 2.0e-15 87.0 278 33.5
AL700U10010 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 2.0e-15 87.0 278 33.5
Carub.0001s2842 Capsella rubella HOM05D007074 ORTHO05D008542 3.4e-15 86.3 284 33.8
CARHR029240 Cardamine hirsuta HOM05D007074 ORTHO05D008542 3.4e-15 86.3 273 34.8
vmacro03335 Vaccinium macrocarpon HOM05D001104 ORTHO05D006535 4.5e-15 85.9 250 33.6
Glyma.08G097500 Glycine max HOM05D007074 ORTHO05D008542 5.9e-15 85.5 245 35.5
BcaB07g32617 Brassica carinata HOM05D007074 ORTHO05D008542 1.0e-14 84.7 284 32.4
Lj6g0018330 Lotus japonicus HOM05D007074 ORTHO05D008542 1.3e-14 84.3 260 35.4
A04p26510 Brassica napus HOM05D007074 ORTHO05D008542 1.7e-14 84.0 284 32.4
C04p63930 Brassica napus HOM05D007074 ORTHO05D008542 1.7e-14 84.0 284 32.4
BolC4t27860H Brassica oleracea HOM05D007074 ORTHO05D008542 2.2e-14 83.6 284 31.7
Thhalv10008361m.g Eutrema salsugineum HOM05D007074 ORTHO05D008542 2.9e-14 83.2 292 32.2
VMungo0540G2047 Vigna mungo HOM05D007074 ORTHO05D008542 3.8e-14 82.8 177 38.4
Sp1g26010 Schrenkiella parvula HOM05D007074 ORTHO05D008542 6.5e-14 82.0 281 32.0
BcaC05g27044 Brassica carinata HOM05D007074 ORTHO05D008542 8.5e-14 81.6 277 32.5
C05p29030 Brassica napus HOM05D007074 ORTHO05D008542 8.5e-14 81.6 277 32.5
BolC5t31631H Brassica oleracea HOM05D007074 ORTHO05D008542 8.5e-14 81.6 277 32.5
AT1G30190 Arabidopsis thaliana HOM05D007074 ORTHO05D008542 1.1e-13 81.3 283 31.8
BraA04t18155Z Brassica rapa HOM05D007074 ORTHO05D008542 1.1e-13 81.3 284 31.0
BcaB03g13841 Brassica carinata HOM05D007074 ORTHO05D008542 1.9e-13 80.5 241 35.7
A09p36350 Brassica napus HOM05D007074 ORTHO05D008542 1.9e-13 80.5 278 33.8
BraA09t39159Z Brassica rapa HOM05D007074 ORTHO05D008542 1.9e-13 80.5 278 33.8
Ca_00533_v3 Cicer arietinum L. HOM05D007074 ORTHO05D008542 2.5e-13 80.1 217 35.9
A05p11040 Brassica napus HOM05D007074 ORTHO05D008542 1.2e-12 77.8 277 31.4
BraA05t20049Z Brassica rapa HOM05D007074 ORTHO05D008542 1.2e-12 77.8 277 31.4
A07p10060 Brassica napus HOM05D007074 ORTHO05D008542 1.6e-12 77.4 253 33.6
BraA07t28799Z Brassica rapa HOM05D007074 ORTHO05D008542 1.6e-12 77.4 253 33.6
THA.LOC104820655 Tarenaya hassleriana HOM05D007074 ORTHO05D008542 1.6e-12 77.4 285 31.2
DCAR_003900 Daucus carota HOM05D007074 ORTHO05D008542 2.1e-12 77.0 220 35.5
CsaV3_1G032290 Cucumis sativus L. HOM05D035155 ORTHO05D008542 3.6e-12 76.3 195 34.9
Potri.011G083600 Populus trichocarpa HOM05D007074 ORTHO05D008542 3.6e-12 76.3 235 35.3
ClCG03G006810 Citrullus lanatus HOM05D007074 ORTHO05D008542 6.1e-12 75.5 170 39.4
C04p14170 Brassica napus HOM05D007074 ORTHO05D008542 1.4e-11 74.3 278 32.4
BolC4t23006H Brassica oleracea HOM05D007074 ORTHO05D008542 1.4e-11 74.3 278 32.4
BcaC02g11538 Brassica carinata HOM05D007074 ORTHO05D008542 1.8e-11 73.9 278 32.4
CANSAT35G1578 Cannabis sativa HOM05D007074 ORTHO05D008542 5.1e-11 72.4 62 66.1
BcaB06g28786 Brassica carinata HOM05D007074 ORTHO05D008542 1.1e-10 71.2 267 30.3
Rhsim13G0115100 Rhododendron simsii HOM05D007074 ORTHO05D008542 1.1e-10 71.2 80 55.0
Sed0023002 Sechium edule HOM05D007074 ORTHO05D008542 2.0e-10 70.5 203 35.5
Aa31LG10G6790 Aethionema arabicum HOM05D007074 ORTHO05D008542 3.3e-10 69.7 240 32.9
Thhalv10017803m.g Eutrema salsugineum HOM05D007074 ORTHO05D008542 3.3e-10 69.7 289 31.5
AL4G30590 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 9.7e-10 68.2 295 31.9
arahy.Tifrunner.gnm1.ann1.0G1Q0G Arachis hypogaea HOM05D007074 ORTHO05D008542 9.7e-10 68.2 250 34.0
AT2G34610 Arabidopsis thaliana HOM05D007074 ORTHO05D008542 2.2e-09 67.0 296 30.7
AL270U10020 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 2.8e-09 66.6 295 31.5
Carub.0004s1629 Capsella rubella HOM05D007074 ORTHO05D008542 2.8e-09 66.6 291 29.2
BcaB02g09522 Brassica carinata HOM05D007074 ORTHO05D008542 6.3e-09 65.5 249 33.3
Sp4g16880 Schrenkiella parvula HOM05D007074 ORTHO05D008542 1.1e-08 64.7 290 30.3
CARHR128710 Cardamine hirsuta HOM05D007074 ORTHO05D008542 1.8e-08 63.9 292 30.8
MBI02_g24299_MAGBIO Magnolia biondii HOM05D007074 ORTHO05D008542 2.4e-08 63.5 255 30.2
Aa31LG6G5540 Aethionema arabicum HOM05D007074 ORTHO05D008542 1.2e-07 61.2 155 32.9
FAN11G3402 Fragaria x ananassa HOM05D007074 ORTHO05D008542 1.2e-07 61.2 101 43.6
MELO3C002749.2 Cucumis melo HOM05D035155 ORTHO05D008542 2.0e-07 60.5 180 32.2
ClCG03G006720 Citrullus lanatus HOM05D035155 ORTHO05D008542 3.4e-07 59.7 197 35.0
MBI18_g24479_MAGBIO Magnolia biondii HOM05D007074 ORTHO05D008542 7.7e-07 58.5 193 34.2
SHI24840 Sapria himalayana HOM05D042770 ORTHO05D008542 1.3e-06 57.8 68 52.9
SHI24843 Sapria himalayana HOM05D042770 ORTHO05D008542 1.3e-06 57.8 68 52.9


User provided reference genes

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