Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 1.7e-167 594.0 794 100.0
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 2.2e-90 337.8 811 81.5
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 1.8e-84 318.2 185 95.1
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 1.6e-75 288.5 801 81.6
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 3.4e-70 270.8 679 89.5
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 1.9e-65 255.0 820 71.7
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 3.2e-60 237.7 763 79.3
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 3.2e-60 237.7 676 86.8
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 4.1e-60 237.3 366 68.0
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 5.4e-60 236.9 364 67.6
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.1e-59 235.0 461 54.0
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 4.6e-59 233.8 352 70.5
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 2.5e-57 228.0 805 67.0
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.5e-57 228.0 835 70.4
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 3.3e-57 227.6 812 74.4
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 7.3e-57 226.5 291 46.0
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 1.2e-56 225.7 299 49.8
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 1.6e-56 225.3 248 55.6
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 6.2e-56 223.4 309 66.7
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 1.1e-55 222.6 685 80.6
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 1.4e-55 222.2 816 70.8
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 6.8e-55 219.9 305 72.5
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 2.2e-53 214.9 715 74.8
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 2.9e-53 214.5 664 79.1
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 3.7e-53 214.2 842 66.4
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 3.7e-53 214.2 833 69.1
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 8.3e-53 213.0 684 83.9
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 1.4e-52 212.2 281 59.4
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.4e-52 212.2 782 74.0
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 1.4e-52 212.2 282 46.8
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 1.9e-52 211.8 345 60.6
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 3.2e-52 211.1 307 63.2
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 4.1e-52 210.7 395 58.2
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 9.2e-52 209.5 368 70.4
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 9.2e-52 209.5 309 76.1
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 1.6e-51 208.8 397 63.0
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 4.6e-51 207.2 204 56.4
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 4.6e-51 207.2 774 74.5
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 7.8e-51 206.5 771 74.7
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 1.0e-50 206.1 404 62.1
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.0e-50 206.1 654 80.3
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 1.0e-50 206.1 396 65.2
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 3.0e-50 204.5 816 72.1
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 3.9e-50 204.1 737 76.9
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 6.6e-50 203.4 310 66.1
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 1.9e-49 201.8 785 74.3
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 3.3e-49 201.1 658 74.8
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 3.3e-49 201.1 155 67.1
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 4.3e-49 200.7 339 59.6
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 5.6e-49 200.3 299 77.3
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 1.2e-48 199.1 310 71.9
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 1.2e-48 199.1 658 78.6
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 2.1e-48 198.4 210 56.2
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 3.6e-48 197.6 668 77.5
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 4.7e-48 197.2 352 67.0
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 6.2e-48 196.8 310 71.3
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 8.1e-48 196.4 431 46.4
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 8.1e-48 196.4 177 63.3
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 8.1e-48 196.4 334 61.1
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 8.1e-48 196.4 335 61.2
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 1.1e-47 196.1 309 74.4
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 1.1e-47 196.1 375 63.2
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 1.4e-47 195.7 434 49.8
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 1.4e-47 195.7 342 73.7
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 1.8e-47 195.3 189 56.6
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 1.8e-47 195.3 658 78.9
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 2.4e-47 194.9 189 56.6
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 2.4e-47 194.9 189 56.6
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 5.2e-47 193.7 289 77.2
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 8.9e-47 193.0 126 69.8
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 1.2e-46 192.6 280 46.8
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 1.5e-46 192.2 658 78.3
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 3.4e-46 191.0 126 70.6
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 4.4e-46 190.7 410 64.6
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 7.6e-46 189.9 215 52.1
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 1.7e-45 188.7 155 63.9
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 2.2e-45 188.3 189 55.0
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 2.9e-45 188.0 189 55.0
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 8.4e-45 186.4 153 59.5
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 1.9e-44 185.3 189 54.5
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 2.4e-44 184.9 153 61.4
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 3.2e-44 184.5 297 68.7
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 4.2e-44 184.1 210 53.8
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 4.2e-44 184.1 629 83.6
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 7.1e-44 183.3 278 74.8
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 3.5e-43 181.0 153 58.2
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 4.6e-43 180.6 154 57.8
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 4.6e-43 180.6 153 56.9
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 4.6e-43 180.6 153 59.5
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 7.8e-43 179.9 300 69.7
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 7.8e-43 179.9 300 69.7
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 1.0e-42 179.5 153 57.5
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 1.3e-42 179.1 258 49.6
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 7.3e-41 173.3 153 58.2
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 6.2e-40 170.2 211 49.3
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 8.1e-40 169.9 151 57.6
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 3.1e-39 167.9 153 57.5
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 1.5e-38 165.6 295 72.2
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 2.0e-38 165.2 130 62.3
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 7.6e-38 163.3 232 43.5
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 1.7e-37 162.2 284 72.5
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 5.6e-33 147.1 280 60.7
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 8.1e-32 143.3 279 60.2
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 6.4e-29 133.7 150 49.3
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.6e-27 129.0 299 56.9
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 3.5e-27 127.9 109 56.0
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.1e-25 122.9 102 58.8
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 1.5e-25 122.5 102 56.9
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.1e-24 118.6 102 53.9
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 4.0e-23 114.4 102 71.6
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 3.4e-22 111.3 102 71.6
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 3.4e-22 111.3 102 51.0
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 5.8e-22 110.5 102 71.6
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 1.7e-21 109.0 70 71.4
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 4.9e-21 107.5 99 52.5
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 7.1e-20 103.6 81 59.3
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 6.0e-19 100.5 98 53.1
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 1.0e-18 99.8 103 46.6
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 3.9e-18 97.8 103 46.6
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 1.5e-17 95.9 103 66.0
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 3.3e-17 94.7 68 63.2
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 1.1e-15 89.7 64 62.5
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 1.4e-15 89.4 86 73.3
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 4.5e-14 84.3 49 83.7
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 5.8e-14 84.0 72 51.4
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 6.5e-13 80.5 61 57.4
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 2.5e-12 78.6 59 59.3
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 3.5e-11 74.7 52 63.5
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 2.3e-10 72.0 69 49.3
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 7.4e-09 67.0 43 67.4
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 8.2e-08 63.5 120 30.8
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 1.4e-07 62.8 100 38.0
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 9.0e-07 60.1 122 28.7
Mapoly0015s0193 Marchantia polymorpha HOM05D004079 ORTHO05D023551 2.0e-06 58.9 105 32.4
COL.COLO4_05681 Corchorus olitorius HOM05D006740 ORTHO05D008571 3.4e-06 58.2 127 28.3
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 4.5e-06 57.8 116 29.3
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 7.7e-06 57.0 116 30.2
Mapoly0096s0019 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.0e-05 56.6 113 29.2


User provided reference genes

Program Settings