Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 3.8e-312 1074.3 554 100.0
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.6e-239 832.8 559 80.5
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 5.9e-231 804.3 689 65.9
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.1e-197 693.7 551 67.2
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 4.7e-196 688.3 551 66.1
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 4.1e-192 675.2 555 65.9
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 7.8e-191 671.0 557 65.7
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 7.8e-191 671.0 547 65.4
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 5.1e-190 668.3 560 66.2
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 6.6e-190 667.9 555 65.6
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 7.3e-189 664.5 549 63.9
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 8.9e-187 657.5 560 65.2
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 7.6e-186 654.4 559 64.4
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.0e-182 644.0 559 61.5
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 1.6e-180 636.7 576 61.8
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.6e-180 636.7 562 60.7
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 2.8e-180 636.0 555 62.9
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 3.6e-180 635.6 559 61.4
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 1.5e-178 630.2 555 62.5
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.4e-178 629.0 554 62.6
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 5.8e-178 628.2 554 63.0
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 1.3e-177 627.1 559 63.3
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.7e-177 626.7 552 62.5
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 3.8e-177 625.5 558 64.2
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.4e-177 624.8 554 61.9
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 7.1e-176 621.3 554 61.9
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 7.1e-176 621.3 558 61.6
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.6e-175 620.2 548 63.3
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 7.8e-175 617.8 541 61.2
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.7e-174 616.7 551 62.3
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 3.6e-172 609.0 541 61.0
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 8.1e-172 607.8 551 60.8
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.4e-171 607.1 564 60.3
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 2.2e-169 599.7 560 59.8
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 2.9e-169 599.4 563 60.0
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 1.4e-168 597.0 560 58.2
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 4.2e-168 595.5 564 59.6
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 2.7e-167 592.8 556 59.4
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 4.3e-165 585.5 560 58.6
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 1.8e-163 580.1 560 59.1
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.8e-163 580.1 562 57.8
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 3.1e-163 579.3 558 58.1
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 1.2e-162 577.4 560 57.7
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 1.5e-162 577.0 560 57.7
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 1.0e-158 564.3 472 64.2
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 3.9e-158 562.4 558 55.7
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 3.3e-157 559.3 564 56.9
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 4.3e-157 558.9 556 57.7
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 7.4e-157 558.1 548 57.7
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 4.8e-156 555.4 556 57.7
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 1.8e-155 553.5 566 56.4
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 2.9e-153 546.2 553 55.3
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 4.9e-153 545.4 560 56.8
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 2.5e-152 543.1 559 55.8
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 4.2e-152 542.3 563 55.8
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 4.6e-151 538.9 560 56.4
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 3.9e-150 535.8 523 60.0
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 8.7e-150 534.6 554 56.5
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.1e-149 534.3 554 56.9
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 1.5e-149 533.9 593 52.4
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 2.2e-148 530.0 549 56.1
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 8.2e-148 528.1 554 56.7
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 3.1e-147 526.2 547 54.8
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 2.6e-146 523.1 554 56.3
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 4.2e-144 515.8 549 54.5
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 3.9e-142 509.2 450 62.9
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 3.9e-142 509.2 548 53.6
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 2.0e-141 506.9 548 53.5
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 2.0e-141 506.9 549 53.2
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 5.7e-141 505.4 548 53.8
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 5.7e-141 505.4 559 53.3
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 4.8e-140 502.3 552 53.3
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 1.1e-139 501.1 560 53.0
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 1.4e-139 500.7 532 53.6
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 6.9e-139 498.4 552 53.4
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.5e-138 497.3 392 65.3
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 2.0e-138 496.9 552 53.4
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 2.6e-138 496.5 552 53.3
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 5.9e-138 495.4 547 52.3
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 2.2e-137 493.4 551 52.8
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 2.2e-137 493.4 551 52.6
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 5.0e-137 492.3 557 51.9
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 5.0e-137 492.3 548 51.8
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 6.5e-137 491.9 555 52.6
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.9e-136 490.3 548 52.0
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 7.2e-136 488.4 488 55.3
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.3e-132 477.6 549 52.1
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 3.1e-131 473.0 563 50.8
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 7.7e-130 468.4 265 93.6
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 1.0e-129 468.0 549 49.9
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 6.5e-129 465.3 485 55.5
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 6.7e-126 455.3 358 65.6
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.5e-122 443.0 470 54.0
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.6e-119 434.1 480 53.5
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 2.1e-119 433.7 392 63.8
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 5.2e-118 429.1 562 47.7
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 1.7e-113 414.1 557 45.6
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 7.2e-104 382.1 330 61.8
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 9.5e-104 381.7 568 43.5
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.2e-100 370.5 346 58.7
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 1.2e-87 328.2 575 38.1
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.6e-87 327.8 386 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 1.7e-84 317.8 522 40.0
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 2.2e-84 317.4 568 37.3
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 2.7e-82 310.5 552 37.7
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 5.6e-80 302.8 215 69.8
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 7.3e-80 302.4 287 61.0
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 6.0e-74 282.7 392 44.4
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 3.0e-73 280.4 321 52.3
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 8.1e-71 272.3 445 41.8
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.6e-69 267.3 283 56.2
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 1.6e-63 248.1 283 50.5
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 1.2e-61 241.9 353 42.8
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 1.5e-61 241.5 509 34.2
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 6.4e-60 236.1 267 51.3
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.2e-59 233.8 165 70.3
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.8e-55 219.9 268 53.4
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 1.2e-53 215.3 418 35.6
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 8.4e-52 209.1 153 69.9
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.1e-46 190.7 195 52.8
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 9.3e-43 179.1 148 64.9
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 4.3e-40 170.2 177 54.2
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 1.3e-39 168.7 119 69.7
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.1e-38 165.6 205 48.3
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 3.2e-35 154.1 239 44.8
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 4.2e-35 153.7 116 71.6
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 7.2e-35 152.9 145 57.2
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 9.7e-32 142.5 239 42.3
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.7e-31 140.6 239 41.8
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 7.9e-18 96.3 90 60.0
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 8.8e-17 92.8 198 36.4
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 1.7e-15 88.6 107 50.5
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 4.8e-15 87.0 91 56.0
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 4.8e-15 87.0 91 56.0
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 4.5e-13 80.5 94 51.1
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 4.4e-08 63.9 140 37.1
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 4.8e-07 60.5 81 44.4


User provided reference genes

Program Settings