Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 6.7e-63 243.8 120 100.0
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.4e-31 139.8 77 85.7
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 3.9e-31 138.3 77 84.4
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 5.2e-31 137.9 77 85.7
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 5.2e-31 137.9 77 85.7
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 4.4e-30 134.8 102 70.6
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 9.7e-30 133.7 77 83.1
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 1.7e-29 132.9 77 80.5
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 2.2e-29 132.5 77 83.1
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 2.2e-29 132.5 77 80.5
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 3.7e-29 131.7 77 79.2
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 5.3e-28 127.9 71 80.3
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 7.0e-28 127.5 71 84.5
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 1.6e-27 126.3 77 72.7
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 2.0e-27 125.9 77 76.6
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 2.6e-27 125.6 77 76.6
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.6e-27 125.6 77 72.7
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 3.5e-27 125.2 77 75.3
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 4.5e-27 124.8 71 81.7
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.5e-27 124.8 78 80.8
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.5e-27 124.8 78 80.8
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.5e-27 124.8 78 80.8
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.5e-27 124.8 78 80.8
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 5.9e-27 124.4 77 71.4
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 1.3e-26 123.2 78 80.8
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.7e-26 122.9 71 81.7
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.2e-26 122.5 77 70.1
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 5.0e-26 121.3 77 74.0
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 5.0e-26 121.3 77 72.7
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 6.5e-26 120.9 122 55.7
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 1.5e-25 119.8 77 75.3
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 1.9e-25 119.4 93 67.7
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 3.2e-25 118.6 78 75.6
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 3.2e-25 118.6 71 76.1
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 4.2e-25 118.2 77 71.4
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 5.5e-25 117.9 77 72.7
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 1.2e-24 116.7 77 71.4
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.1e-24 115.9 71 77.5
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 3.6e-24 115.2 70 77.1
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 6.1e-24 114.4 77 70.1
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 6.1e-24 114.4 78 71.8
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 8.0e-24 114.0 70 74.3
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 1.0e-23 113.6 77 70.1
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 1.8e-23 112.8 78 71.8
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 1.8e-23 112.8 76 69.7
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.8e-23 112.8 71 77.5
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 5.2e-23 111.3 71 69.0
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 5.2e-23 111.3 95 60.0
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 5.2e-23 111.3 66 78.8
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 6.7e-23 110.9 66 77.3
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 8.8e-23 110.5 59 84.7
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 8.8e-23 110.5 71 74.6
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 1.2e-22 110.2 74 68.9
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 1.5e-22 109.8 78 70.5
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 1.5e-22 109.8 78 70.5
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 2.0e-22 109.4 76 68.4
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.3e-22 108.6 57 86.0
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 4.4e-22 108.2 71 67.6
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 4.4e-22 108.2 77 67.5
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 1.3e-21 106.7 78 71.8
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.7e-21 106.3 71 70.4
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 4.8e-21 104.8 65 76.9
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 6.3e-21 104.4 70 71.4
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 8.3e-21 104.0 78 67.9
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 8.3e-21 104.0 71 69.0
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 1.4e-20 103.2 77 66.2
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 1.4e-20 103.2 78 69.2
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 9.1e-20 100.5 76 61.8
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 3.5e-19 98.6 77 61.0
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 4.5e-19 98.2 77 59.7
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 5.9e-19 97.8 69 69.6
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 1.6e-16 89.7 62 71.0
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 2.1e-16 89.4 81 53.1
Haze_22356 Corylus avellana HOM05D000059 ORTHO05D004122 2.7e-16 89.0 62 75.8
Cfa013711 Carpinus fangiana HOM05D000059 ORTHO05D004122 6.1e-16 87.8 62 74.2
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 1.8e-12 76.3 70 48.6
CiPaw.07G169600 Carya illinoinensis HOM05D000059 ORTHO05D004122 4.5e-11 71.6 81 59.3
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 5.5e-09 64.7 44 70.5
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 1.6e-08 63.2 71 42.3
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 2.8e-08 62.4 43 74.4
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 6.1e-08 61.2 70 42.9
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.0e-07 60.5 43 69.8
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 1.8e-07 59.7 45 68.9
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 1.8e-07 59.7 45 68.9
ClCG11G014390 Citrullus lanatus HOM05D000059 ORTHO05D004122 3.4e-06 55.5 46 65.2
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 4.4e-06 55.1 45 64.4
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 5.7e-06 54.7 38 63.2
vmacro06124 Vaccinium macrocarpon HOM05D006783 ORTHO05D008330 5.7e-06 54.7 28 82.1


User provided reference genes

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