Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000838 Carpinus fangiana HOM05D000330 ORTHO05D034135 2.2e-82 308.9 155 100.0
Cfa000837 Carpinus fangiana HOM05D000330 ORTHO05D034135 3.5e-80 301.6 155 98.1
Cfa007500 Carpinus fangiana HOM05D000330 ORTHO05D000209 2.3e-31 139.4 89 79.8
Haze_14595 Corylus avellana HOM05D000330 ORTHO05D000209 1.9e-30 136.3 89 78.7
CiPaw.04G020700 Carya illinoinensis HOM05D000330 ORTHO05D000209 8.4e-26 120.9 89 69.7
CiPaw.03G031100 Carya illinoinensis HOM05D000330 ORTHO05D000209 1.4e-25 120.2 89 69.7
CSS0040344 Camellia sinensis var. sinensis HOM05D000330 ORTHO05D000209 2.1e-24 116.3 89 70.8
Dinv33695 Davidia involucrata HOM05D000330 ORTHO05D000209 6.0e-24 114.8 90 65.6
TWI56G0145 Tripterygium wilfordii HOM05D000330 ORTHO05D000209 7.9e-24 114.4 89 64.0
CSS0033731 Camellia sinensis var. sinensis HOM05D000330 ORTHO05D000209 3.0e-23 112.5 89 69.7
Hma1.2p1_0449F.1_g154910 Hydrangea macrophylla HOM05D000330 ORTHO05D000209 5.1e-23 111.7 91 64.8
Eucgr.J02142 Eucalyptus grandis HOM05D000330 ORTHO05D000209 6.7e-23 111.3 90 61.1
CANSAT64G2828 Cannabis sativa HOM05D000330 ORTHO05D000209 1.1e-22 110.5 89 61.8
TWI12G0676 Tripterygium wilfordii HOM05D000330 ORTHO05D000209 2.5e-22 109.4 85 62.4
Prupe.3G273700 Prunus persica HOM05D000330 ORTHO05D000209 3.3e-22 109.0 89 61.8
Glyma.13G065900 Glycine max HOM05D000330 ORTHO05D000209 9.6e-22 107.5 90 57.8
Cc07_g02860 Coffea canephora HOM05D000330 ORTHO05D000209 1.6e-21 106.7 91 59.3
Peaxi162Scf00129g00633 Petunia axillaris HOM05D000330 ORTHO05D000209 2.1e-21 106.3 92 60.9
Cpa.g.sc14.55 Carica papaya HOM05D000330 ORTHO05D000209 3.7e-21 105.5 92 59.8
Hma1.2p1_0017F.1_g012110 Hydrangea macrophylla HOM05D000330 ORTHO05D000209 3.7e-21 105.5 89 60.7
Oeu033346.1 Olea europaea HOM05D000330 ORTHO05D000209 3.7e-21 105.5 96 57.3
MELO3C009898.2 Cucumis melo HOM05D000330 ORTHO05D000209 4.8e-21 105.1 89 58.4
CsaV3_3G041780 Cucumis sativus L. HOM05D000330 ORTHO05D000209 4.8e-21 105.1 89 58.4
MD17G1046000 Malus domestica HOM05D000330 ORTHO05D000209 4.8e-21 105.1 89 59.6
ClCG10G014760 Citrullus lanatus HOM05D000330 ORTHO05D000209 6.2e-21 104.8 89 59.6
Potri.017G075600 Populus trichocarpa HOM05D000330 ORTHO05D000209 8.2e-21 104.4 89 58.4
Manes.15G176300 Manihot esculenta HOM05D000330 ORTHO05D000209 1.1e-20 104.0 89 59.6
CAN.G206.100 Capsicum annuum HOM05D000330 ORTHO05D000209 1.4e-20 103.6 92 59.8
Lsat_1_v5_gn_3_102000 Lactuca sativa HOM05D000330 ORTHO05D000209 1.4e-20 103.6 90 57.8
Sabra17G0067500 Salix brachista HOM05D000330 ORTHO05D000209 5.3e-20 101.7 89 57.3
Potri.004G130300 Populus trichocarpa HOM05D000330 ORTHO05D000209 9.0e-20 100.9 89 55.1
MD09G1044100 Malus domestica HOM05D000330 ORTHO05D000209 1.2e-19 100.5 89 58.4
Sed0020271 Sechium edule HOM05D000330 ORTHO05D000209 1.2e-19 100.5 89 56.2
SalBow1G1277 Salvia bowleyana HOM05D000330 ORTHO05D000209 1.5e-19 100.1 93 53.8
SGA_v2.0_scaffold30G12514 Striga asiatica HOM05D000330 ORTHO05D000209 2.0e-19 99.8 93 54.8
RcHm_v2.0_Chr2g0169441 Rosa chinensis HOM05D000330 ORTHO05D000209 2.6e-19 99.4 93 55.9
PGR142G1488 Punica granatum HOM05D000330 ORTHO05D000209 3.4e-19 99.0 89 56.2
FAN02G0424 Fragaria x ananassa HOM05D000330 ORTHO05D000209 4.5e-19 98.6 92 56.5
FAN02G0450 Fragaria x ananassa HOM05D000330 ORTHO05D000209 4.5e-19 98.6 92 56.5
FAN02G1069 Fragaria x ananassa HOM05D000330 ORTHO05D000209 4.5e-19 98.6 92 56.5
FAN05G1953 Fragaria x ananassa HOM05D000330 ORTHO05D000209 4.5e-19 98.6 92 56.5
FAN09G4868 Fragaria x ananassa HOM05D000330 ORTHO05D000209 4.5e-19 98.6 92 56.5
Sabra04G0087400 Salix brachista HOM05D000330 ORTHO05D000209 4.5e-19 98.6 89 53.9
arahy.Tifrunner.gnm1.ann1.LS0J2N Arachis hypogaea HOM05D000330 ORTHO05D000209 5.8e-19 98.2 93 54.8
arahy.Tifrunner.gnm1.ann1.TPH81X Arachis hypogaea HOM05D000330 ORTHO05D000209 5.8e-19 98.2 93 54.8
Atru.chr8.2442 Acer truncatum HOM05D000330 ORTHO05D000209 7.6e-19 97.8 97 54.6
CiPaw.13G051200 Carya illinoinensis HOM05D000330 ORTHO05D034135 7.6e-19 97.8 78 64.1
Migut.H00883 Erythranthe guttata HOM05D000330 ORTHO05D000209 7.6e-19 97.8 95 52.6
Lj2g0027029 Lotus japonicus HOM05D000330 ORTHO05D000209 7.6e-19 97.8 96 54.2
Nn3g17089 Nelumbo nucifera HOM05D000330 ORTHO05D000209 7.6e-19 97.8 89 57.3
Ca_04257_v3 Cicer arietinum L. HOM05D000330 ORTHO05D000209 1.0e-18 97.4 96 54.2
FvH4_6g49530 Fragaria vesca HOM05D000330 ORTHO05D000209 1.0e-18 97.4 92 55.4
FAN14G0780 Fragaria x ananassa HOM05D000330 ORTHO05D000209 1.0e-18 97.4 92 55.4
FAN14G4196 Fragaria x ananassa HOM05D000330 ORTHO05D000209 1.0e-18 97.4 92 55.4
Dinv34995 Davidia involucrata HOM05D000330 ORTHO05D000209 1.3e-18 97.1 89 62.9
Migut.K01345 Erythranthe guttata HOM05D000330 ORTHO05D000209 1.3e-18 97.1 101 52.5
Medtr6g011080 Medicago truncatula HOM05D000330 ORTHO05D000209 1.3e-18 97.1 99 51.5
Phvul.004G025100 Phaseolus vulgaris HOM05D000330 ORTHO05D000209 1.3e-18 97.1 96 50.0
Hund13282 Selenicereus undatus HOM05D000330 ORTHO05D000209 2.9e-18 95.9 92 56.5
Sed0027031 Sechium edule HOM05D000330 ORTHO05D000209 6.5e-18 94.7 94 52.1
Actinidia36038 Actinidia chinensis HOM05D000330 ORTHO05D000209 1.1e-17 94.0 89 55.1
QL02p079896 Quercus lobata HOM05D000330 ORTHO05D000209 1.4e-17 93.6 78 67.9
Gohir.D09G022000 Gossypium hirsutum HOM05D000330 ORTHO05D000209 1.9e-17 93.2 93 58.1
Gorai.006G025900 Gossypium raimondii HOM05D000330 ORTHO05D000209 1.9e-17 93.2 93 58.1
Actinidia38744 Actinidia chinensis HOM05D000330 ORTHO05D000209 2.5e-17 92.8 90 58.9
Lalb_Chr02g0159441 Lupinus albus HOM05D000330 ORTHO05D000209 2.5e-17 92.8 95 52.6
Psat0s1303g0040 Pisum sativum HOM05D000330 ORTHO05D000209 5.5e-17 91.7 98 50.0
Duzib187G0239 Durio zibethinus HOM05D000330 ORTHO05D000209 7.1e-17 91.3 99 55.6
Thecc.04G072900 Theobroma cacao HOM05D000330 ORTHO05D000209 7.1e-17 91.3 99 53.5
Gohir.A09G022801 Gossypium hirsutum HOM05D000330 ORTHO05D000209 9.3e-17 90.9 99 56.6
MSTRG.3213 Avicennia marina HOM05D000330 ORTHO05D000209 1.6e-16 90.1 100 51.0
Lj7A402G43 Lonicera japonica HOM05D000330 ORTHO05D000209 1.6e-16 90.1 79 59.5
Nitab4.5_0001239g0180 Nicotiana tabacum HOM05D000330 ORTHO05D000209 1.6e-16 90.1 92 53.3
Nitab4.5_0002265g0180 Nicotiana tabacum HOM05D000330 ORTHO05D000209 1.6e-16 90.1 92 53.3
Lsat_1_v5_gn_4_180161 Lactuca sativa HOM05D000330 ORTHO05D000209 4.6e-16 88.6 89 51.7
VMungo0464G1274 Vigna mungo HOM05D000330 ORTHO05D000209 4.6e-16 88.6 83 50.6
SGA_v2.0_scaffold135G34787 Striga asiatica HOM05D000330 ORTHO05D000209 1.8e-15 86.7 99 50.5
Gohir.A11G069000 Gossypium hirsutum HOM05D000330 ORTHO05D000209 2.3e-15 86.3 93 54.8
Gohir.D11G073000 Gossypium hirsutum HOM05D000330 ORTHO05D000209 2.3e-15 86.3 93 54.8
Gorai.007G078400 Gossypium raimondii HOM05D000330 ORTHO05D000209 2.3e-15 86.3 93 54.8
DCAR_011170 Daucus carota HOM05D000330 ORTHO05D000209 3.9e-15 85.5 90 47.8
Actinidia06058 Actinidia chinensis HOM05D000330 ORTHO05D000209 5.1e-15 85.1 89 50.6
PGSC0003DMG400001408 Solanum tuberosum HOM05D000330 ORTHO05D000209 5.1e-15 85.1 92 51.1
Duzib147G0815 Durio zibethinus HOM05D000330 ORTHO05D000209 1.1e-14 84.0 99 53.5
TAR374G0099 Trochodendron aralioides HOM05D000330 ORTHO05D000209 1.1e-14 84.0 89 53.9
Actinidia02719 Actinidia chinensis HOM05D000330 ORTHO05D000209 1.5e-14 83.6 91 53.8
Rhsim10G0030800 Rhododendron simsii HOM05D000330 ORTHO05D000209 1.5e-14 83.6 89 50.6
Aqoxy3G03225 Aquilegia oxysepala HOM05D000330 ORTHO05D000209 1.9e-14 83.2 96 52.1
Solyc02g087550.3 Solanum lycopersicum HOM05D000330 ORTHO05D000209 1.9e-14 83.2 92 50.0
THA.LOC104821053 Tarenaya hassleriana HOM05D000330 ORTHO05D000209 1.9e-14 83.2 93 47.3
Sopen02g032320 Solanum pennellii HOM05D000330 ORTHO05D000209 2.5e-14 82.8 92 50.0
DCAR_006718 Daucus carota HOM05D000373 ORTHO05D001146 5.7e-14 81.6 91 49.5
Nitab4.5_0000002g0520 Nicotiana tabacum HOM05D000330 ORTHO05D000209 9.7e-14 80.9 94 44.7
Sc10g0003920 Simmondsia chinensis HOM05D000330 ORTHO05D000209 1.3e-13 80.5 99 50.5
Nitab4.5_0003708g0040 Nicotiana tabacum HOM05D000330 ORTHO05D000209 1.6e-13 80.1 94 44.7
Aa31LG9G1630 Aethionema arabicum HOM05D000330 ORTHO05D009256 3.7e-13 79.0 94 50.0
Ah.12g065320 Amaranthus hybridus HOM05D000330 ORTHO05D000209 8.2e-13 77.8 108 43.5
COL.COLO4_25223 Corchorus olitorius HOM05D000330 ORTHO05D000209 8.2e-13 77.8 81 55.6
Hund15668 Selenicereus undatus HOM05D000330 ORTHO05D000209 1.4e-12 77.0 98 42.9
PGSC0003DMG400017854 Solanum tuberosum HOM05D000330 ORTHO05D000209 1.4e-12 77.0 91 46.2
TAR640G0006 Trochodendron aralioides HOM05D000330 ORTHO05D000209 2.4e-12 76.3 73 53.4
THA.LOC104808014 Tarenaya hassleriana HOM05D000330 ORTHO05D000209 6.9e-12 74.7 99 46.5
BcaC08g44441 Brassica carinata HOM05D000330 ORTHO05D000209 9.0e-12 74.3 95 47.4
C06p18850 Brassica napus HOM05D000330 ORTHO05D000209 9.0e-12 74.3 95 47.4
BolC6t37090H Brassica oleracea HOM05D000330 ORTHO05D000209 9.0e-12 74.3 95 47.4
CARHR262140 Cardamine hirsuta HOM05D000330 ORTHO05D000209 2.6e-11 72.8 101 45.5
CDE07G1182 Ceratophyllum demersum HOM05D000330 ORTHO05D000209 2.6e-11 72.8 92 47.8
HanXRQChr09g0265621 Helianthus annuus HOM05D000330 ORTHO05D000209 2.6e-11 72.8 89 43.8
TAR622G0725 Trochodendron aralioides HOM05D000330 ORTHO05D000209 3.4e-11 72.4 75 53.3
Aa31LG11G14490 Aethionema arabicum HOM05D000330 ORTHO05D000209 5.9e-11 71.6 91 46.2
EL10Ac2g02921 Beta vulgaris HOM05D000330 ORTHO05D000209 5.9e-11 71.6 103 44.7
vmacro05760 Vaccinium macrocarpon HOM05D000330 ORTHO05D000209 5.9e-11 71.6 90 48.9
A07p20180 Brassica napus HOM05D000330 ORTHO05D000209 7.7e-11 71.2 96 45.8
Thhalv10027776m.g Eutrema salsugineum HOM05D000330 ORTHO05D000209 7.7e-11 71.2 96 45.8
HanXRQChr05g0153201 Helianthus annuus HOM05D000330 ORTHO05D000209 1.0e-10 70.9 90 40.0
HanXRQChr11g0346891 Helianthus annuus HOM05D000330 ORTHO05D000209 1.0e-10 70.9 90 40.0
Sopen03g020270 Solanum pennellii HOM05D000330 ORTHO05D000209 1.0e-10 70.9 81 48.1
BraA07t29717Z Brassica rapa HOM05D000330 ORTHO05D000209 3.8e-10 68.9 96 44.8
CAN.G1146.2 Capsicum annuum HOM05D000330 ORTHO05D000209 3.8e-10 68.9 96 43.8
PSO591G0250 Papaver somniferum HOM05D000330 ORTHO05D000209 3.8e-10 68.9 90 47.8
AL7G50100 Arabidopsis lyrata HOM05D000330 ORTHO05D000209 5.0e-10 68.6 106 45.3
PSO832G0478 Papaver somniferum HOM05D000330 ORTHO05D000209 8.5e-10 67.8 90 46.7
Solyc03g077910.4 Solanum lycopersicum HOM05D000330 ORTHO05D000209 1.4e-09 67.0 81 45.7
Sp7g02080 Schrenkiella parvula HOM05D000330 ORTHO05D000209 7.2e-09 64.7 100 41.0
unitig_748.g8437 Utricularia gibba HOM05D000330 ORTHO05D000209 1.2e-08 63.9 89 42.7
AUR62030575 Chenopodium quinoa HOM05D000330 ORTHO05D000209 1.6e-08 63.5 103 40.8
AUR62018306 Chenopodium quinoa HOM05D000330 ORTHO05D000209 2.1e-08 63.2 102 42.2
Ciclev10011781m.g Citrus clementina HOM05D000330 ORTHO05D000209 2.1e-08 63.2 93 39.8
HanXRQChr17g0547541 Helianthus annuus HOM05D000330 ORTHO05D000209 2.7e-08 62.8 90 43.3
Carub.0007s3570 Capsella rubella HOM05D000330 ORTHO05D000209 4.6e-08 62.0 108 41.7
MBI04_g18043_MAGBIO Magnolia biondii HOM05D000330 ORTHO05D000209 4.6e-08 62.0 80 47.5
Glyma.08G068500 Glycine max HOM05D000330 ORTHO05D000209 6.1e-08 61.6 67 52.2
Glyma.09G104700 Glycine max HOM05D000330 ORTHO05D000209 6.1e-08 61.6 67 52.2
AT5G39990 Arabidopsis thaliana HOM05D000330 ORTHO05D000209 1.0e-07 60.8 108 43.5
DCAR_013971 Daucus carota HOM05D000330 ORTHO05D000209 1.1e-06 57.4 82 41.5
HPP92_017558 Vanilla planifolia HOM05D000330 ORTHO05D000209 1.1e-06 57.4 90 50.0
CDE06G2005 Ceratophyllum demersum HOM05D000330 ORTHO05D000209 1.5e-06 57.0 82 48.8
Ca_04258_v3 Cicer arietinum L. HOM05D000330 ORTHO05D000209 3.3e-06 55.8 49 57.1
Thhalv10013590m.g Eutrema salsugineum HOM05D000330 ORTHO05D000209 7.4e-06 54.7 96 38.5
Lalb_Chr06g0175551 Lupinus albus HOM05D000330 ORTHO05D000209 9.7e-06 54.3 71 43.7


User provided reference genes

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