Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 7.7e-242 840.1 438 100.0
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 4.6e-202 708.0 434 87.1
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 4.8e-58 229.6 497 40.2
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 2.4e-57 227.3 398 43.2
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 1.9e-54 217.6 469 42.4
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 2.4e-54 217.2 469 42.4
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 1.6e-42 177.9 460 37.8
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 2.5e-38 164.1 445 35.5
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 4.2e-38 163.3 497 33.4
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 9.3e-38 162.2 424 35.4
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 9.3e-38 162.2 455 34.5
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.1e-37 161.0 467 35.8
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 2.7e-37 160.6 492 32.7
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 3.5e-37 160.2 439 36.7
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 4.6e-37 159.8 491 33.2
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 6.0e-37 159.5 475 36.4
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 7.9e-37 159.1 443 34.8
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 7.9e-37 159.1 485 36.1
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.8e-36 157.9 447 33.3
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 2.3e-36 157.5 459 38.3
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 5.1e-36 156.4 460 33.0
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 1.9e-35 154.5 446 34.8
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 4.3e-35 153.3 439 35.1
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.3e-34 151.8 455 37.4
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.1e-33 148.7 463 34.8
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 1.8e-33 147.9 457 34.8
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 9.0e-33 145.6 453 32.5
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 9.0e-33 145.6 464 32.5
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 9.0e-33 145.6 508 32.7
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 1.5e-32 144.8 434 32.3
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.6e-32 144.1 433 37.2
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 3.4e-32 143.7 430 33.5
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 3.4e-32 143.7 504 31.5
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 3.4e-32 143.7 459 32.5
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 4.5e-32 143.3 461 32.1
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 5.8e-32 142.9 482 33.4
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 7.6e-32 142.5 479 32.6
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-31 141.4 457 33.0
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.7e-31 141.4 457 33.0
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 2.9e-31 140.6 434 33.6
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 3.8e-31 140.2 442 32.1
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 3.8e-31 140.2 427 35.6
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 3.8e-31 140.2 361 35.7
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 3.8e-31 140.2 469 33.5
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.4e-30 138.3 441 34.7
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 7.2e-30 136.0 446 33.6
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 9.3e-30 135.6 452 31.2
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 1.6e-29 134.8 521 33.0
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 2.7e-29 134.0 520 34.0
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 6.1e-29 132.9 445 35.1
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 1.0e-28 132.1 411 34.1
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.3e-28 131.7 425 35.3
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 2.3e-28 131.0 455 31.4
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 3.9e-28 130.2 436 33.5
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 5.1e-28 129.8 439 31.9
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 5.1e-28 129.8 463 33.7
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 5.1e-28 129.8 549 31.9
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.1e-27 128.6 459 33.1
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.1e-27 128.6 499 31.3
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 1.5e-27 128.3 441 32.0
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.9e-27 127.9 468 33.5
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 3.3e-27 127.1 472 32.2
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 4.3e-27 126.7 434 32.3
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 4.3e-27 126.7 434 32.3
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 4.3e-27 126.7 374 35.3
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 4.3e-27 126.7 462 31.6
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 9.7e-27 125.6 443 32.5
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-26 125.2 440 31.8
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-26 125.2 452 30.5
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 1.3e-26 125.2 440 31.8
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.6e-26 124.8 466 29.0
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 3.7e-26 123.6 463 31.7
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 1.1e-25 122.1 428 33.6
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 1.8e-25 121.3 510 31.8
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 6.9e-25 119.4 493 31.2
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 6.9e-25 119.4 439 33.0
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 7.7e-24 115.9 445 31.5
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 6.5e-23 112.8 447 32.0
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.4e-22 111.7 438 31.5
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 1.9e-22 111.3 477 30.6
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.5e-22 110.9 442 31.4
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.5e-22 110.9 463 32.0
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 7.2e-22 109.4 419 30.1
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 9.4e-22 109.0 498 28.7
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 9.4e-22 109.0 419 30.5
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 2.7e-21 107.5 460 29.8
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 3.6e-21 107.1 419 29.6
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 4.6e-21 106.7 418 30.4
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 4.6e-21 106.7 435 30.3
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 6.1e-21 106.3 444 29.7
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 7.9e-21 105.9 493 28.8
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 1.0e-20 105.5 428 29.2
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.8e-20 104.8 438 29.7
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.8e-20 104.8 473 29.4
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 3.9e-20 103.6 335 31.6
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 2.0e-19 101.3 288 35.4
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 9.7e-19 99.0 461 30.8
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.7e-18 98.2 419 29.8
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 3.7e-18 97.1 486 30.9
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 3.7e-18 97.1 207 40.6
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 1.1e-17 95.5 454 30.2
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 3.1e-17 94.0 457 30.2
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 5.3e-17 93.2 398 28.6
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 6.9e-17 92.8 422 27.3
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 9.1e-17 92.4 481 26.4
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-16 92.0 419 25.3
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 1.2e-16 92.0 418 26.8
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.5e-16 91.7 458 27.5
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 2.0e-16 91.3 418 26.8
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 3.4e-16 90.5 407 29.7
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 4.5e-16 90.1 90 57.8
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 5.9e-16 89.7 414 27.1
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 7.7e-16 89.4 411 26.3
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.7e-15 88.2 414 28.0
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 2.2e-15 87.8 72 66.7
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 2.9e-15 87.4 143 43.4
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 2.9e-15 87.4 419 27.0
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 2.9e-15 87.4 413 27.1
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 2.9e-15 87.4 419 27.0
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 3.8e-15 87.0 418 27.0
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 8.5e-15 85.9 419 28.6
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 8.5e-15 85.9 457 26.0
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 1.9e-14 84.7 356 30.9
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 3.2e-14 84.0 464 28.7
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 5.5e-14 83.2 254 31.5
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 7.2e-14 82.8 431 26.7
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 7.2e-14 82.8 428 29.7
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 1.2e-13 82.0 470 28.1
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.6e-13 81.6 211 37.4
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 2.1e-13 81.3 432 25.7
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 6.1e-13 79.7 401 26.7
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 6.1e-13 79.7 535 25.8
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 1.4e-12 78.6 419 26.0
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 2.3e-12 77.8 419 26.3
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 1.1e-11 75.5 449 26.9
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 1.1e-11 75.5 428 25.9
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 1.5e-11 75.1 434 28.8
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 2.6e-11 74.3 424 25.7
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 7.4e-11 72.8 237 29.1
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 7.4e-11 72.8 426 28.2
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 9.7e-11 72.4 420 27.1
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 1.3e-10 72.0 404 25.7
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 3.7e-10 70.5 430 27.9
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 4.8e-10 70.1 424 25.9
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-09 68.9 414 25.8
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.8e-09 68.2 428 27.1
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 1.8e-09 68.2 174 35.1
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 4.1e-09 67.0 443 26.2
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 7.0e-09 66.2 220 28.6
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.6e-08 64.3 194 29.9
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 3.8e-07 60.5 179 33.5
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 3.8e-07 60.5 503 25.0
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 2.5e-06 57.8 54 63.0
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 3.2e-06 57.4 355 26.2


User provided reference genes

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