Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 0.0e+00 2449.9 1423 100.0
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 0.0e+00 2255.7 1425 89.7
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 0.0e+00 1589.7 1466 66.9
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 0.0e+00 1138.3 883 69.2
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 5.2e-255 885.6 1604 44.3
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 5.2e-255 885.6 1184 47.7
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 5.2e-247 859.0 967 53.9
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 2.0e-246 857.1 1180 48.4
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 3.4e-246 856.3 1616 45.2
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 1.6e-243 847.4 1189 45.9
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 3.9e-242 842.8 1493 41.9
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 6.1e-240 835.5 1210 44.7
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.4e-231 807.7 1551 44.2
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.5e-230 804.3 1170 45.0
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 7.5e-230 802.0 1115 46.6
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.9e-220 770.8 1535 41.8
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.2e-219 768.1 1192 43.8
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 1.7e-218 764.2 1184 42.7
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 5.6e-217 759.2 1537 43.7
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 7.3e-217 758.8 1494 45.2
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 3.6e-216 756.5 1444 41.6
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.5e-214 751.1 1105 44.7
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 2.1e-211 740.7 1477 42.5
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 9.9e-206 721.8 1501 40.1
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.7e-205 721.1 1551 42.1
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.1e-201 708.4 1251 40.0
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 2.5e-201 707.2 882 48.9
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 3.6e-200 703.4 1566 41.2
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.8e-199 701.0 1089 43.8
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 5.8e-198 696.0 1499 36.6
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 8.4e-197 692.2 1502 39.8
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 6.0e-195 686.0 1490 36.7
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 5.1e-194 682.9 1460 40.3
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 1.9e-193 681.0 1235 38.7
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 2.5e-193 680.6 866 46.9
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 1.2e-190 671.8 1574 40.5
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 1.4e-188 664.8 1194 40.5
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 1.0e-186 658.7 1212 39.2
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 6.3e-184 649.4 1198 39.6
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.6e-182 644.0 1543 40.0
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.8e-181 640.2 1546 40.0
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 7.9e-179 632.5 1466 38.2
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 5.7e-177 626.3 1560 38.8
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 2.2e-176 624.4 858 46.0
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 9.0e-175 619.0 1489 37.0
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 2.9e-173 614.0 1493 36.6
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 3.3e-169 600.5 1496 36.5
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 9.7e-169 599.0 835 45.0
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 2.9e-165 587.4 1074 39.9
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 1.5e-161 575.1 1185 35.9
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 4.4e-161 573.5 718 47.6
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 1.0e-157 562.4 1479 37.3
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 3.8e-157 560.5 1216 36.3
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 2.1e-155 554.7 1214 37.1
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 4.4e-153 547.0 1158 37.5
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 5.7e-153 546.6 1173 36.4
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 2.8e-152 544.3 1478 38.1
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 6.3e-152 543.1 1217 36.7
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 2.2e-149 534.6 1467 34.2
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 3.7e-144 517.3 1219 36.8
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 4.5e-142 510.4 1488 37.4
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 9.8e-137 492.7 1123 35.2
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 1.6e-134 485.3 1450 32.1
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 5.0e-133 480.3 1140 35.5
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 8.6e-133 479.6 899 39.2
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.1e-132 479.2 1107 37.6
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 5.6e-132 476.9 1559 32.0
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 8.0e-131 473.0 1431 31.4
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 4.0e-130 470.7 1455 32.4
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 3.4e-129 467.6 1493 36.4
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 7.5e-129 466.5 1428 33.3
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 1.7e-128 465.3 1428 33.2
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 6.4e-128 463.4 1428 33.3
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 8.3e-128 463.0 1467 33.8
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 5.4e-127 460.3 819 37.7
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 5.0e-125 453.8 1453 35.9
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.9e-124 451.8 1421 31.5
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 5.6e-124 450.3 1423 30.8
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 2.8e-123 448.0 1430 31.0
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 4.0e-122 444.1 1426 30.7
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 1.9e-119 435.3 996 35.1
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 8.9e-114 416.4 1363 34.6
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 8.9e-114 416.4 1477 36.1
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 1.4e-111 409.1 1102 31.7
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 1.9e-111 408.7 1143 32.6
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.6e-110 405.6 939 34.6
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.2e-107 396.0 1432 29.1
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 1.2e-105 389.4 1070 30.5
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 4.9e-104 384.0 1102 31.8
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.7e-102 378.3 1149 29.7
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 3.5e-102 377.9 1146 29.5
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 8.6e-101 373.2 992 32.7
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 1.5e-100 372.5 1425 27.2
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.5e-100 371.7 1151 29.6
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 9.3e-95 353.2 1180 31.7
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 3.5e-94 351.3 854 32.8
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 1.1e-92 346.3 813 34.1
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 9.6e-92 343.2 805 33.3
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 1.9e-87 328.9 885 33.8
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 3.5e-86 324.7 1457 30.3
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 8.1e-83 313.5 1162 27.0
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 8.1e-83 313.5 1016 38.2
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 2.6e-81 308.5 1503 28.1
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 7.9e-78 297.0 757 32.5
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 4.5e-73 281.2 238 61.3
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 3.9e-69 268.1 1509 27.0
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.5e-68 265.4 446 39.5
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.5e-68 265.4 446 39.5
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.6e-67 262.7 1537 27.9
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.1e-67 262.3 446 39.2
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 2.7e-62 245.4 1225 27.0
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 6.1e-54 217.6 1137 26.1
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 9.7e-52 210.3 289 43.3
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 4.8e-51 208.0 303 42.6
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 5.7e-44 184.5 525 31.6
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 3.8e-40 171.8 542 45.2
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 4.4e-36 158.3 391 32.0
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 7.5e-36 157.5 173 50.3
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 1.7e-35 156.4 341 34.6
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 4.8e-35 154.8 473 30.0
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 3.5e-33 148.7 335 34.3
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 2.2e-32 146.0 341 33.7
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 6.5e-32 144.4 1027 23.3
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 4.2e-31 141.7 526 29.8
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 8.8e-29 134.0 1113 22.3
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.0e-28 132.9 283 37.1
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 1.1e-26 127.1 488 53.9
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 2.4e-26 125.9 138 50.7
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 5.4e-26 124.8 423 27.4
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 8.6e-24 117.5 143 42.0
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 7.2e-23 114.4 120 51.7
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 6.8e-21 107.8 108 56.5
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.4e-18 100.1 113 54.0
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 5.4e-18 98.2 480 29.6
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 5.4e-18 98.2 204 32.4
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 1.6e-17 96.7 323 32.5
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 6.6e-16 91.3 116 47.4
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 8.6e-16 90.9 122 45.1
Medtr7g451470 Medicago truncatula HOM05D002737 ORTHO05D009499 1.5e-15 90.1 180 37.2
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 4.3e-15 88.6 116 45.7
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 8.0e-14 84.3 86 53.5
SEGI_31962 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 3.0e-13 82.4 355 27.0
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 1.8e-10 73.2 192 33.3
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 9.2e-10 70.9 82 45.1
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 4.6e-09 68.6 117 42.7
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 7.8e-09 67.8 463 31.5
DCAR_005756 Daucus carota HOM05D005129 ORTHO05D005585 1.7e-08 66.6 227 30.4
Aa31LG10G6530 Aethionema arabicum HOM05D005129 ORTHO05D005585 6.6e-08 64.7 107 36.4
PSO675G2011 Papaver somniferum HOM05D026995 ORTHO05D005585 6.6e-08 64.7 68 55.9
CSS0045402 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 1.1e-07 63.9 112 41.1
FAN25G0646 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.1e-07 63.9 128 40.6
PSO541G4161 Papaver somniferum HOM05D026995 ORTHO05D005585 1.5e-07 63.5 94 47.9
CSS0038484 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 2.5e-07 62.8 112 41.1
CSS0031745 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 3.3e-07 62.4 111 40.5
PSO541G0381 Papaver somniferum HOM05D026995 ORTHO05D005585 7.3e-07 61.2 73 52.1
SHI24812 Sapria himalayana HOM05D005129 ORTHO05D005585 1.2e-06 60.5 38 76.3
Aqoxy7G00167 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 1.6e-06 60.1 99 36.4
Aqoxy7G00171 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 1.6e-06 60.1 99 36.4
Aqoxy88s005 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 1.6e-06 60.1 99 36.4
MELO3C033939.2 Cucumis melo HOM05D018160 ORTHO05D034961 2.8e-06 59.3 53 50.9


User provided reference genes

Program Settings