Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.0e-187 659.8 314 100.0
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 1.1e-136 490.3 277 83.0
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 1.2e-135 486.9 318 75.8
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 1.6e-132 476.5 281 80.8
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 6.7e-131 471.1 284 78.5
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 2.0e-130 469.5 279 80.6
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 2.6e-130 469.2 279 82.1
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 3.3e-130 468.8 277 78.3
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 2.8e-129 465.7 277 78.7
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 1.4e-128 463.4 281 77.2
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.4e-128 463.4 299 73.6
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 3.1e-128 462.2 299 73.2
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 3.1e-128 462.2 279 78.9
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.0e-127 459.5 284 76.4
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 2.6e-127 459.1 293 76.8
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 3.5e-127 458.8 302 72.8
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 4.5e-127 458.4 277 79.1
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 5.9e-127 458.0 280 76.4
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 1.0e-126 457.2 277 76.5
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 2.9e-126 455.7 304 72.4
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 5.0e-126 454.9 280 75.7
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 5.0e-126 454.9 293 76.1
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 8.5e-126 454.1 277 75.8
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 1.5e-125 453.4 288 72.9
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 9.4e-125 450.7 277 76.2
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 1.8e-123 446.4 278 74.5
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 3.0e-123 445.7 277 75.1
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 5.2e-123 444.9 276 74.6
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 8.8e-123 444.1 278 74.5
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 5.7e-122 441.4 277 74.0
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.3e-121 440.3 288 71.9
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.7e-121 439.9 298 69.8
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 6.3e-121 438.0 286 72.4
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 1.4e-120 436.8 279 72.8
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 2.6e-119 432.6 280 72.5
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 3.5e-119 432.2 285 71.6
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 4.5e-119 431.8 279 72.0
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 5.9e-119 431.4 290 70.7
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 1.3e-118 430.3 277 73.3
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 1.3e-118 430.3 275 72.4
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 1.3e-118 430.3 279 74.6
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 2.2e-118 429.5 323 66.6
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 2.9e-118 429.1 288 71.2
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 3.8e-118 428.7 314 67.5
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.5e-117 426.8 285 70.9
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 4.2e-117 425.2 280 72.1
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 4.2e-117 425.2 276 72.8
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 2.1e-116 422.9 283 71.4
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 6.1e-116 421.4 280 71.8
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 1.4e-115 420.2 280 71.4
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 1.8e-115 419.9 272 71.7
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.8e-115 419.9 288 69.1
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.3e-115 419.5 285 69.8
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 2.3e-115 419.5 279 71.7
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 3.0e-115 419.1 280 71.8
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 4.0e-115 418.7 259 74.5
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 4.0e-115 418.7 282 71.3
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.2e-114 417.2 281 71.5
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.2e-114 417.2 281 71.5
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 1.2e-114 417.2 280 71.1
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 1.5e-114 416.8 282 70.6
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 1.5e-114 416.8 280 71.1
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.6e-114 416.0 338 60.9
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 4.4e-114 415.2 267 70.8
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 5.7e-114 414.8 293 68.9
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 7.5e-114 414.5 280 70.4
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 7.5e-114 414.5 312 65.7
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 7.5e-114 414.5 281 71.2
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 7.5e-114 414.5 283 69.6
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 7.5e-114 414.5 283 69.6
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 6.3e-113 411.4 280 71.1
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 1.8e-112 409.8 280 70.4
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 1.8e-112 409.8 280 70.4
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 1.8e-112 409.8 280 70.4
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 7.0e-112 407.9 329 61.1
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 2.0e-111 406.4 363 56.2
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 1.7e-110 403.3 277 69.7
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 6.5e-110 401.4 238 78.6
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.5e-109 399.4 284 68.0
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.5e-109 399.4 284 68.0
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 7.2e-109 397.9 288 64.9
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.6e-108 395.6 391 52.4
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.7e-105 386.7 278 69.1
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 4.9e-105 385.2 238 73.9
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 8.3e-105 384.4 279 69.2
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.1e-104 384.0 279 69.2
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.6e-103 380.2 384 51.8
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 2.7e-103 379.4 277 64.6
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 2.9e-102 375.9 305 61.6
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 6.6e-102 374.8 236 75.4
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 1.2e-100 370.5 274 63.5
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 3.0e-99 365.9 270 64.8
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 2.9e-97 359.4 280 60.7
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 1.4e-96 357.1 322 57.5
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.8e-96 356.7 308 56.8
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 1.7e-94 350.1 289 60.6
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 3.3e-93 345.9 237 67.5
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 2.7e-87 326.2 261 59.0
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 6.6e-86 321.6 186 79.6
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 4.7e-84 315.5 322 52.8
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 2.6e-82 309.7 221 67.4
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 2.9e-81 306.2 219 65.8
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 8.3e-81 304.7 186 74.7
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 1.4e-80 303.9 273 54.9
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 5.4e-80 302.0 228 64.9
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 8.1e-76 288.1 187 73.3
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 3.7e-73 279.3 268 52.2
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 8.4e-73 278.1 304 48.0
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 1.3e-65 254.2 253 49.0
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 4.3e-61 239.2 142 76.1
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 1.5e-58 230.7 259 45.2
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 6.4e-57 225.3 252 42.9
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 1.9e-56 223.8 118 89.8
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 4.2e-56 222.6 200 57.0
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 7.9e-55 218.4 194 57.2
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 2.1e-47 193.7 112 77.7
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.0e-46 191.4 111 77.5
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.1e-45 188.0 94 94.7
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.8e-36 156.8 98 74.5
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.7e-31 140.2 89 74.2
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.9e-29 134.0 93 66.7
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 4.3e-29 132.9 112 60.7
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.2e-28 130.6 92 66.3
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 9.0e-27 125.2 95 65.3
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 1.5e-26 124.4 91 67.0
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 1.0e-25 121.7 103 62.1
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.8e-22 110.9 75 70.7
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 8.8e-22 108.6 61 77.0
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 7.4e-21 105.5 112 47.3
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 2.2e-20 104.0 97 52.6
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 6.3e-20 102.4 51 88.2
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 4.1e-19 99.8 72 68.1
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.2e-18 98.2 53 73.6
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 2.9e-17 93.6 71 62.0
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 7.4e-13 79.0 65 63.1
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.8e-12 77.0 38 81.6
Haze_05939 Corylus avellana HOM05D005284 ORTHO05D006609 2.8e-12 77.0 42 90.5
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.4e-11 74.7 52 61.5
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 1.8e-11 74.3 35 80.0
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.2e-10 71.6 46 65.2
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 5.9e-10 69.3 53 60.4
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 7.2e-08 62.4 33 72.7
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 7.2e-08 62.4 33 72.7
EL10Ac8g20282 Beta vulgaris HOM05D002609 ORTHO05D002820 1.6e-07 61.2 160 26.9
AUR62044208 Chenopodium quinoa HOM05D002609 ORTHO05D002820 6.1e-07 59.3 160 26.2
AUR62042376 Chenopodium quinoa HOM05D002609 ORTHO05D002820 1.4e-06 58.2 160 26.2
AUR62044157 Chenopodium quinoa HOM05D002609 ORTHO05D002820 1.4e-06 58.2 160 26.2
PSO017G3448 Papaver somniferum HOM05D002609 ORTHO05D002820 2.3e-06 57.4 144 25.7
PSO478G2797 Papaver somniferum HOM05D002609 ORTHO05D002820 2.3e-06 57.4 144 25.7
Dinv27620 Davidia involucrata HOM05D002609 ORTHO05D002820 3.0e-06 57.0 144 24.3
MELO3C002131.2 Cucumis melo HOM05D002609 ORTHO05D002820 5.2e-06 56.2 161 26.1
Phvul.002G330400 Phaseolus vulgaris HOM05D002609 ORTHO05D002820 8.8e-06 55.5 143 26.6


User provided reference genes

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