Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 2.0e-141 505.8 256 100.0
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 1.9e-83 313.2 172 92.4
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 1.3e-60 237.3 201 66.2
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 4.2e-54 215.7 204 57.4
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 7.1e-54 214.9 188 61.7
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 2.1e-50 203.4 208 53.4
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 6.4e-47 191.8 200 52.0
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 6.6e-44 181.8 242 46.3
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 2.5e-43 179.9 203 50.2
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 5.6e-43 178.7 193 47.7
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 3.6e-42 176.0 199 52.8
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 1.4e-41 174.1 205 49.3
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 6.9e-41 171.8 197 45.2
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 2.6e-40 169.9 145 60.7
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 1.3e-39 167.5 147 56.5
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 1.7e-39 167.2 188 51.6
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 2.2e-39 166.8 221 47.5
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.9e-38 163.7 160 54.4
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 4.2e-38 162.5 172 55.8
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 4.2e-38 162.5 160 54.4
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 2.1e-37 160.2 190 50.0
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 2.1e-37 160.2 201 46.8
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 2.7e-37 159.8 219 45.7
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 2.7e-37 159.8 219 45.7
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 3.5e-37 159.5 217 45.6
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.3e-36 157.5 182 51.1
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 2.3e-36 156.8 164 50.6
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 1.1e-35 154.5 190 47.4
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 1.9e-35 153.7 226 39.4
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 9.6e-35 151.4 187 48.1
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 2.1e-34 150.2 153 52.9
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 2.8e-34 149.8 211 41.2
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 8.1e-34 148.3 205 44.4
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 1.1e-33 147.9 172 53.5
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 1.4e-33 147.5 186 45.7
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 1.4e-33 147.5 161 48.4
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 1.8e-33 147.1 161 48.4
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 2.4e-33 146.7 208 43.3
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 4.0e-33 146.0 142 46.5
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 9.0e-33 144.8 204 44.6
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 2.6e-32 143.3 165 44.2
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 4.5e-32 142.5 193 42.0
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 1.3e-31 141.0 188 45.7
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 4.9e-31 139.0 215 40.9
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.4e-30 137.5 190 38.9
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 1.9e-30 137.1 185 45.4
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.5e-30 136.7 197 36.5
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.5e-29 132.9 142 43.0
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 6.0e-29 132.1 210 43.8
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.9e-29 131.7 138 43.5
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 3.0e-28 129.8 145 48.3
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 8.7e-28 128.3 160 41.9
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.1e-27 127.9 147 47.6
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 3.3e-27 126.3 193 42.5
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 3.3e-27 126.3 143 46.2
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 3.3e-27 126.3 150 45.3
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 5.6e-27 125.6 155 45.2
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 7.4e-27 125.2 167 42.5
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 9.6e-27 124.8 167 42.5
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 1.3e-26 124.4 201 37.3
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 1.6e-26 124.0 158 44.3
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.6e-26 124.0 155 45.8
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 2.1e-26 123.6 155 44.5
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.8e-26 123.2 160 44.4
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 2.8e-26 123.2 196 36.2
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 2.8e-26 123.2 155 45.8
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 3.7e-26 122.9 158 44.3
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 3.7e-26 122.9 162 43.8
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 3.7e-26 122.9 124 52.4
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 8.2e-26 121.7 124 51.6
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 1.1e-25 121.3 192 42.7
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 1.4e-25 120.9 171 43.3
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 1.4e-25 120.9 171 43.3
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 2.4e-25 120.2 139 42.4
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.4e-25 120.2 228 39.9
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.0e-25 119.4 89 57.3
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 9.0e-25 118.2 158 41.1
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 1.5e-24 117.5 224 37.9
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.4e-24 116.3 159 40.3
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 4.5e-24 115.9 210 36.2
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 1.3e-23 114.4 211 37.9
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.3e-23 114.4 173 39.3
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 2.2e-23 113.6 161 45.3
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 3.2e-22 109.8 90 55.6
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 7.1e-22 108.6 90 56.7
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 9.3e-22 108.2 126 50.8
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 2.7e-21 106.7 136 44.1
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 2.7e-21 106.7 91 52.7
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 3.5e-21 106.3 115 47.8
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 1.0e-20 104.8 164 40.2
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 1.8e-20 104.0 87 58.6
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 3.0e-20 103.2 94 52.1
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.9e-20 102.8 172 36.0
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.9e-19 100.5 147 39.5
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 4.3e-19 99.4 105 48.6
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 9.7e-19 98.2 139 36.0
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.3e-18 97.8 132 40.2
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 6.3e-18 95.5 132 38.6
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 6.3e-18 95.5 132 38.6
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 1.1e-17 94.7 132 38.6
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 1.1e-17 94.7 132 38.6
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 4.1e-17 92.8 143 37.8
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 9.0e-17 91.7 157 35.7
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.5e-16 90.9 157 35.0
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 1.5e-16 90.9 142 38.7
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 2.0e-16 90.5 131 35.9
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 1.7e-15 87.4 142 35.9
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 5.0e-15 85.9 99 44.4
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 5.0e-15 85.9 129 41.9
FvH4_6g29350 Fragaria vesca HOM05D005423 ORTHO05D006223 2.1e-13 80.5 67 52.2
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.6e-13 79.3 66 56.1
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.0e-12 78.2 251 26.3
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.4e-12 77.8 63 55.6
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.4e-12 77.8 63 55.6
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.3e-12 77.0 154 32.5
Nn8g39654 Nelumbo nucifera HOM05D005423 ORTHO05D006223 3.3e-11 73.2 112 36.6
FAN18G0575 Fragaria x ananassa HOM05D005423 ORTHO05D006223 5.7e-11 72.4 63 52.4
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 7.4e-11 72.0 131 38.9
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 2.8e-10 70.1 63 54.0
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 8.2e-10 68.6 132 34.8
FAN11G2744 Fragaria x ananassa HOM05D005423 ORTHO05D046010 1.8e-09 67.4 54 53.7
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 4.1e-09 66.2 132 34.1
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 5.3e-09 65.9 228 26.8
DCAR_002955 Daucus carota HOM05D005423 ORTHO05D006223 6.9e-09 65.5 91 38.5
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 9.1e-09 65.1 63 52.4
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.2e-08 64.7 78 42.3
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.5e-08 64.3 98 34.7
AL7G23570 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.6e-08 63.5 126 36.5
FvH4_3g19970 Fragaria vesca HOM05D005423 ORTHO05D046010 2.6e-08 63.5 54 51.9
FAN25G3864 Fragaria x ananassa HOM05D046692 ORTHO05D006223 7.7e-08 62.0 48 54.2
FAN28G2925 Fragaria x ananassa HOM05D005784 ORTHO05D007803 7.7e-08 62.0 68 44.1
FAN26G0124 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.0e-07 61.6 75 41.3
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.3e-07 61.2 164 23.2
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 2.2e-07 60.5 154 26.6
A09p38220 Brassica napus HOM05D005423 ORTHO05D006223 3.8e-07 59.7 61 55.7
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 8.5e-07 58.5 142 35.9
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 8.5e-07 58.5 175 33.7
SMO290G0002 Selaginella moellendorffii HOM05D005423 ORTHO05D006223 8.5e-07 58.5 164 29.3
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 1.1e-06 58.2 139 35.3
FAN09G3285 Fragaria x ananassa HOM05D046692 ORTHO05D006223 1.1e-06 58.2 48 52.1
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 1.4e-06 57.8 175 31.4
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 1.4e-06 57.8 140 35.0
Cpa.g.sc159.25 Carica papaya HOM05D005423 ORTHO05D006223 1.4e-06 57.8 85 38.8
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 1.9e-06 57.4 128 27.3
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 3.2e-06 56.6 94 30.9
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 4.2e-06 56.2 94 30.9
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 4.2e-06 56.2 171 33.3
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 5.5e-06 55.8 175 31.4
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 5.5e-06 55.8 175 31.4
Carub.0007s1174 Capsella rubella HOM05D005423 ORTHO05D006223 5.5e-06 55.8 137 35.0
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 5.5e-06 55.8 137 26.3
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 5.5e-06 55.8 142 28.2


User provided reference genes

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