Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.2e-258 896.0 447 100.0
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 3.9e-217 758.1 449 83.7
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 8.7e-217 756.9 445 85.6
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 2.3e-209 732.3 447 79.6
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 1.3e-207 726.5 442 80.5
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.2e-205 719.9 447 78.5
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 3.0e-201 705.3 447 77.0
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 1.3e-199 699.9 448 77.0
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.8e-198 696.0 448 76.8
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 3.1e-198 695.3 448 76.6
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.2e-197 693.3 446 75.3
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 1.5e-197 693.0 447 77.4
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 2.0e-197 692.6 451 76.3
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 2.5e-195 685.6 442 76.2
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 7.2e-195 684.1 448 74.3
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 2.1e-194 682.6 451 75.4
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 3.6e-194 681.8 447 75.6
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 6.1e-194 681.0 450 74.7
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.0e-193 680.2 444 75.5
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 2.3e-193 679.1 451 74.9
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 5.2e-193 677.9 449 74.4
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 6.7e-193 677.6 451 74.5
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 2.6e-192 675.6 447 74.3
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.3e-192 675.2 444 75.9
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 9.7e-192 673.7 447 74.9
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 9.7e-192 673.7 438 76.5
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 2.8e-191 672.2 447 73.8
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 1.2e-186 656.8 442 71.9
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 1.6e-186 656.4 449 71.9
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.1e-186 654.4 450 72.2
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 4.0e-185 651.7 447 71.8
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.3e-183 646.7 450 71.6
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.7e-183 645.2 448 71.7
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.7e-183 645.2 448 71.7
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 1.8e-182 642.9 442 72.9
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 3.1e-182 642.1 446 70.4
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 5.3e-182 641.3 442 71.7
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 7.0e-182 641.0 402 78.9
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 2.7e-181 639.0 446 70.6
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.5e-181 638.3 448 70.8
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 1.0e-180 637.1 438 71.9
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 1.3e-180 636.7 440 72.5
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.9e-180 635.6 444 72.7
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 2.9e-180 635.6 448 71.9
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 8.5e-180 634.0 439 71.1
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 1.1e-179 633.6 440 72.3
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 4.2e-179 631.7 434 71.2
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 2.7e-178 629.0 446 69.3
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 2.7e-178 629.0 434 71.2
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 3.6e-178 628.6 448 71.2
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 8.0e-178 627.5 447 70.7
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 1.4e-177 626.7 387 80.4
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 2.3e-177 625.9 453 70.4
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 6.8e-177 624.4 448 71.4
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 8.8e-177 624.0 448 70.1
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.2e-176 623.6 449 69.9
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.2e-176 623.6 448 70.3
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 1.2e-176 623.6 446 68.6
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 2.0e-176 622.9 412 73.3
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 2.6e-176 622.5 442 69.2
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 4.4e-176 621.7 448 71.2
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 5.7e-176 621.3 433 69.1
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 9.8e-176 620.5 448 70.3
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 2.8e-175 619.0 448 68.3
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 7.0e-174 614.4 447 68.9
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 7.0e-174 614.4 447 68.9
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 2.3e-172 609.4 412 73.3
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 5.0e-172 608.2 436 69.5
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 7.2e-171 604.4 439 68.6
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 2.3e-169 599.4 412 70.6
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.2e-168 597.0 436 70.2
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.5e-168 596.7 449 69.5
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 5.7e-168 594.7 429 68.8
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 6.3e-167 591.3 442 64.9
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 8.3e-167 590.9 433 69.1
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.2e-165 587.0 434 68.4
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.3e-164 583.6 447 66.2
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 2.3e-164 582.8 438 66.7
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 3.8e-164 582.0 459 64.5
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.3e-163 578.9 438 68.7
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.3e-163 578.9 438 68.7
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 1.0e-161 573.9 439 67.2
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 2.3e-161 572.8 469 65.0
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.6e-160 569.3 452 65.3
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.3e-159 567.0 454 65.4
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.7e-159 566.6 454 64.5
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 3.7e-159 565.5 454 64.8
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 4.9e-159 565.1 445 63.8
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.9e-158 563.1 452 64.6
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 3.5e-157 558.9 438 66.2
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 4.6e-157 558.5 450 64.9
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 4.6e-157 558.5 457 62.8
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 1.7e-156 556.6 442 65.2
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 1.7e-156 556.6 400 71.8
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.5e-155 553.5 454 64.1
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 3.3e-155 552.4 431 63.8
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 7.3e-155 551.2 447 64.7
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 9.5e-155 550.8 445 64.0
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 1.2e-154 550.4 440 63.6
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 2.8e-154 549.3 431 63.3
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 2.3e-153 546.2 452 64.4
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 8.9e-153 544.3 435 65.3
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 1.2e-152 543.9 454 63.7
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.5e-152 543.5 449 64.6
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 1.3e-151 540.4 454 63.7
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 1.3e-151 540.4 454 63.7
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.3e-151 540.4 350 74.6
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.3e-151 540.4 374 70.9
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 1.4e-150 537.0 453 62.9
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 2.4e-150 536.2 449 63.7
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 1.6e-149 533.5 452 63.1
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.7e-149 532.7 350 74.0
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 4.6e-149 531.9 349 75.1
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 1.3e-148 530.4 451 63.4
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.8e-145 520.0 424 63.4
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 1.7e-143 513.5 446 57.8
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 8.3e-143 511.1 368 69.8
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 3.2e-142 509.2 448 62.5
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.4e-142 508.4 347 71.2
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 9.2e-142 507.7 446 57.8
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.7e-140 503.4 446 56.5
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 3.9e-140 502.3 409 60.4
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 6.4e-135 485.0 319 74.0
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.2e-133 480.7 380 64.2
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.4e-121 439.9 440 54.8
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.5e-120 437.2 330 65.8
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.9e-118 430.3 370 61.6
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 3.2e-110 402.9 385 56.6
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.3e-108 397.5 298 67.8
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.3e-108 397.5 298 67.8
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 8.2e-98 361.7 458 46.5
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 8.8e-92 341.7 386 48.4
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 1.4e-84 317.8 246 65.4
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 4.4e-75 286.2 190 72.6
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 5.0e-71 272.7 250 58.4
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 8.0e-69 265.4 382 44.2
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 1.5e-62 244.6 146 80.8
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 5.2e-60 236.1 262 52.3
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 6.8e-60 235.7 164 68.9
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 7.8e-40 169.1 153 57.5
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 8.6e-39 165.6 106 73.6
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 8.3e-34 149.1 144 56.9
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 3.5e-32 143.7 109 69.7
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 3.9e-31 140.2 110 67.3
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 4.9e-26 123.2 99 57.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 6.6e-15 86.3 51 74.5
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 2.7e-08 64.3 106 37.7
Sabra16G0200300 Salix brachista HOM05D000076 ORTHO05D005938 5.6e-06 56.6 321 22.1
ClCG08G011690 Citrullus lanatus HOM05D001292 ORTHO05D001202 9.6e-06 55.8 326 20.2


User provided reference genes

Program Settings