Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 1.9e-74 282.3 138 100.0
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 1.0e-54 216.9 145 76.6
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 3.8e-54 214.9 145 75.9
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 2.6e-47 192.2 165 61.2
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 2.0e-42 176.0 114 69.3
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 2.0e-42 176.0 114 69.3
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 2.6e-42 175.6 114 70.2
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 7.5e-42 174.1 114 71.9
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 2.2e-41 172.6 114 68.4
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 2.8e-41 172.2 106 72.6
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 6.3e-41 171.0 112 67.0
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 8.3e-41 170.6 113 67.3
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 9.1e-40 167.2 108 71.3
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 1.2e-39 166.8 112 70.5
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 2.0e-39 166.0 107 71.0
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 2.0e-39 166.0 114 68.4
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 7.7e-39 164.1 111 65.8
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 2.2e-38 162.5 111 64.9
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 2.9e-38 162.2 108 68.5
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 2.9e-38 162.2 111 65.8
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 1.1e-37 160.2 105 71.4
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 2.5e-37 159.1 107 65.4
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 2.5e-37 159.1 111 64.0
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 5.5e-37 157.9 111 62.2
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 9.4e-37 157.1 114 63.2
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 1.2e-36 156.8 106 66.0
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 1.2e-36 156.8 111 63.1
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 4.7e-36 154.8 108 64.8
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 8.0e-36 154.1 111 65.8
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 1.8e-35 152.9 110 61.8
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 1.8e-35 152.9 114 61.4
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 3.0e-35 152.1 106 62.3
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 4.0e-35 151.8 114 60.5
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 5.2e-35 151.4 114 63.2
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 4.4e-34 148.3 114 59.6
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 5.7e-34 147.9 107 66.4
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 7.5e-34 147.5 106 62.3
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 1.7e-33 146.4 111 59.5
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 4.9e-33 144.8 93 66.7
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 1.1e-32 143.7 106 61.3
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 1.4e-32 143.3 92 68.5
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 1.8e-32 142.9 107 61.7
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 5.4e-32 141.4 91 72.5
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 7.0e-32 141.0 94 70.2
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 1.2e-31 140.2 113 58.4
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 3.5e-31 138.7 93 69.9
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 4.5e-31 138.3 105 60.0
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 4.5e-31 138.3 108 61.1
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 7.7e-31 137.5 93 65.6
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 7.7e-31 137.5 105 59.0
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 7.7e-31 137.5 109 56.9
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.9e-30 135.6 109 56.9
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 3.8e-30 135.2 109 57.8
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 3.8e-30 135.2 108 58.3
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 8.6e-30 134.0 95 62.1
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 1.1e-29 133.7 109 57.8
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 1.1e-29 133.7 107 58.9
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 4.2e-29 131.7 142 49.3
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 4.2e-29 131.7 109 56.0
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 4.2e-29 131.7 107 59.8
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 4.2e-29 131.7 104 56.7
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 1.2e-28 130.2 109 56.0
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 1.6e-28 129.8 109 56.9
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 2.1e-28 129.4 105 56.2
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 2.1e-28 129.4 108 58.3
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 2.1e-28 129.4 107 57.0
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 2.8e-28 129.0 109 56.0
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 2.8e-28 129.0 111 55.0
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 4.7e-28 128.3 107 56.1
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 6.1e-28 127.9 109 56.0
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 8.0e-28 127.5 105 56.2
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 1.0e-27 127.1 104 55.8
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 1.0e-27 127.1 104 55.8
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 1.4e-27 126.7 114 52.6
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 1.8e-27 126.3 104 55.8
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 2.3e-27 125.9 104 55.8
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 2.3e-27 125.9 108 51.9
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 2.3e-27 125.9 110 50.9
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 3.0e-27 125.6 104 54.8
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 4.0e-27 125.2 113 54.0
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 5.2e-27 124.8 106 55.7
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 6.8e-27 124.4 106 53.8
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 8.9e-27 124.0 105 57.1
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 1.5e-26 123.2 104 54.8
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 1.5e-26 123.2 131 48.1
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 2.6e-26 122.5 98 56.1
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 2.6e-26 122.5 107 57.0
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 4.4e-26 121.7 104 53.8
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 4.4e-26 121.7 118 50.0
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 3.7e-25 118.6 106 50.9
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 3.7e-25 118.6 106 50.9
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 6.3e-25 117.9 111 48.6
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 8.3e-25 117.5 113 47.8
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 4.1e-24 115.2 111 47.7
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 4.1e-24 115.2 102 52.0
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 4.1e-24 115.2 102 52.0
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 7.0e-24 114.4 93 53.8
Cfa003473 Carpinus fangiana HOM05D006750 ORTHO05D008426 5.9e-23 111.3 56 94.6
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 3.9e-22 108.6 106 47.2
Cfa005130 Carpinus fangiana HOM05D000013 ORTHO05D000011 9.5e-21 104.0 56 87.5
Cfa014827 Carpinus fangiana HOM05D006750 ORTHO05D008426 2.8e-20 102.4 56 89.3
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 5.2e-19 98.2 104 42.3
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 3.4e-18 95.5 86 55.8
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 6.4e-17 91.3 98 43.9
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 1.4e-16 90.1 115 42.6
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 4.1e-16 88.6 121 36.4
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 5.4e-16 88.2 77 57.1
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 9.2e-16 87.4 130 34.6
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 7.3e-13 77.8 59 59.3
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 4.7e-12 75.1 90 45.6
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 2.3e-11 72.8 103 35.0
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 3.1e-11 72.4 166 27.7
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 3.4e-10 68.9 113 36.3
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 7.5e-10 67.8 98 34.7
Cfa001145 Carpinus fangiana HOM05D000011 ORTHO05D000157 4.1e-08 62.0 32 87.5
Haze_22110 Corylus avellana HOM05D000635 ORTHO05D000488 4.6e-07 58.5 28 92.9
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 5.1e-06 55.1 38 55.3


User provided reference genes

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