Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000680 Carpinus fangiana HOM05D003281 ORTHO05D004128 5.0e-108 394.4 195 100.0
FAN01G0101 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.2e-87 325.9 196 84.2
Cfa000681 Carpinus fangiana HOM05D003281 ORTHO05D004128 6.3e-87 324.3 190 86.8
CiPaw.10G062800 Carya illinoinensis HOM05D003281 ORTHO05D004128 1.3e-84 316.6 166 95.2
MD12G1033700 Malus domestica HOM05D003281 ORTHO05D004128 9.4e-83 310.5 190 83.2
TAR626G1141 Trochodendron aralioides HOM05D003281 ORTHO05D004128 1.2e-82 310.1 166 92.2
Prupe.5G007600 Prunus persica HOM05D003281 ORTHO05D004128 2.7e-82 308.9 190 82.6
Dinv01965 Davidia involucrata HOM05D003281 ORTHO05D004128 3.6e-82 308.5 166 91.0
FvH4_7g04800 Fragaria vesca HOM05D003281 ORTHO05D004128 4.7e-82 308.1 166 91.0
FAN20G2649 Fragaria x ananassa HOM05D003281 ORTHO05D004128 6.1e-82 307.8 166 91.0
FAN26G3221 Fragaria x ananassa HOM05D003281 ORTHO05D004128 6.1e-82 307.8 166 91.0
Lj2A344T44 Lonicera japonica HOM05D003281 ORTHO05D004128 8.0e-82 307.4 190 81.6
MD14G1035300 Malus domestica HOM05D003281 ORTHO05D004128 1.0e-81 307.0 190 82.1
Dinv18011 Davidia involucrata HOM05D003281 ORTHO05D004128 1.4e-81 306.6 166 90.4
Hma1.2p1_0181F.1_g079910 Hydrangea macrophylla HOM05D003281 ORTHO05D004128 1.4e-81 306.6 166 89.8
RcHm_v2.0_Chr2g0124681 Rosa chinensis HOM05D003281 ORTHO05D004128 2.3e-81 305.8 166 90.4
FvH4_1g24580 Fragaria vesca HOM05D003281 ORTHO05D004128 3.0e-81 305.4 166 89.8
FAN19G0112 Fragaria x ananassa HOM05D003281 ORTHO05D004128 3.0e-81 305.4 166 89.8
FAN23G2047 Fragaria x ananassa HOM05D003281 ORTHO05D004128 3.0e-81 305.4 166 90.4
QL11p013631 Quercus lobata HOM05D003281 ORTHO05D004128 3.0e-81 305.4 189 81.5
Nn7g38195 Nelumbo nucifera HOM05D003281 ORTHO05D004128 5.2e-81 304.7 166 88.0
Ciclev10014669m.g Citrus clementina HOM05D003281 ORTHO05D004128 8.8e-81 303.9 166 88.6
MSTRG.16470 Avicennia marina HOM05D003281 ORTHO05D004128 1.5e-80 303.1 166 88.0
MELO3C002406.2 Cucumis melo HOM05D003281 ORTHO05D004128 1.5e-80 303.1 166 89.2
GSVIVG01012120001 Vitis vinifera HOM05D003281 ORTHO05D004128 1.5e-80 303.1 166 88.6
Nitab4.5_0000443g0070 Nicotiana tabacum HOM05D003281 ORTHO05D004128 2.0e-80 302.8 166 88.0
Atru.chr10.431 Acer truncatum HOM05D003281 ORTHO05D004128 3.4e-80 302.0 190 80.0
Sed0004438 Sechium edule HOM05D003281 ORTHO05D004128 3.4e-80 302.0 166 89.2
CsaV3_1G010170 Cucumis sativus L. HOM05D003281 ORTHO05D004128 4.4e-80 301.6 166 88.6
Potri.010G114400 Populus trichocarpa HOM05D003281 ORTHO05D004128 7.5e-80 300.8 190 78.4
Thecc.02G006200 Theobroma cacao HOM05D003281 ORTHO05D004128 7.5e-80 300.8 166 88.6
DCAR_001294 Daucus carota HOM05D003281 ORTHO05D004128 9.8e-80 300.4 166 88.0
Aqoxy5G04041 Aquilegia oxysepala HOM05D003281 ORTHO05D004128 1.7e-79 299.7 166 86.7
CANSAT56G2301 Cannabis sativa HOM05D003281 ORTHO05D004128 1.7e-79 299.7 190 78.4
CANSAT56G3182 Cannabis sativa HOM05D003281 ORTHO05D004128 1.7e-79 299.7 190 78.4
Solyc08g075160.3 Solanum lycopersicum HOM05D003281 ORTHO05D004128 1.7e-79 299.7 166 87.3
Gohir.A12G048600 Gossypium hirsutum HOM05D003281 ORTHO05D004128 2.2e-79 299.3 166 89.2
PGR004G1969 Punica granatum HOM05D003281 ORTHO05D004128 2.2e-79 299.3 166 88.6
Rhsim01G0054700 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.2e-79 299.3 166 86.7
Duzib248G1352 Durio zibethinus HOM05D003281 ORTHO05D004128 2.8e-79 298.9 190 80.0
PGSC0003DMG400020817 Solanum tuberosum HOM05D003281 ORTHO05D004128 2.8e-79 298.9 166 86.7
vmacro14667 Vaccinium macrocarpon HOM05D003281 ORTHO05D004128 2.8e-79 298.9 166 86.7
Gohir.D12G047400 Gossypium hirsutum HOM05D003281 ORTHO05D004128 3.7e-79 298.5 190 80.0
Gorai.008G050100 Gossypium raimondii HOM05D003281 ORTHO05D004128 3.7e-79 298.5 190 80.0
Manes.08G044300 Manihot esculenta HOM05D003281 ORTHO05D004128 3.7e-79 298.5 190 78.9
TWI34G0807 Tripterygium wilfordii HOM05D003281 ORTHO05D004128 3.7e-79 298.5 190 79.5
Sopen08g023790 Solanum pennellii HOM05D003281 ORTHO05D004128 4.8e-79 298.1 166 86.7
Peaxi162Scf00199g00516 Petunia axillaris HOM05D003281 ORTHO05D004128 6.3e-79 297.7 166 86.7
Glyma.11G158400 Glycine max HOM05D003281 ORTHO05D004128 8.3e-79 297.4 190 78.4
Actinidia11434 Actinidia chinensis HOM05D003281 ORTHO05D004128 1.4e-78 296.6 166 86.1
CAN.G514.6 Capsicum annuum HOM05D003281 ORTHO05D004128 1.4e-78 296.6 166 86.7
Glyma.04G133100 Glycine max HOM05D003281 ORTHO05D004128 1.4e-78 296.6 190 77.9
VMungo1080G1879 Vigna mungo HOM05D003281 ORTHO05D004128 1.4e-78 296.6 190 78.4
Duzib132G1085 Durio zibethinus HOM05D003281 ORTHO05D004128 1.8e-78 296.2 190 78.9
Gorai.002G136700 Gossypium raimondii HOM05D003281 ORTHO05D004128 1.8e-78 296.2 166 88.6
SGA_v2.0_scaffold254G45247 Striga asiatica HOM05D003281 ORTHO05D004128 1.8e-78 296.2 166 86.1
Gohir.D01G111800 Gossypium hirsutum HOM05D003281 ORTHO05D004128 2.4e-78 295.8 166 88.0
Phvul.005G018700 Phaseolus vulgaris HOM05D003281 ORTHO05D004128 4.1e-78 295.0 190 78.4
Cc02_g28610 Coffea canephora HOM05D003281 ORTHO05D004128 7.0e-78 294.3 190 77.9
CSS0018694 Camellia sinensis var. sinensis HOM05D003281 ORTHO05D004128 9.1e-78 293.9 190 77.9
COL.COLO4_17637 Corchorus olitorius HOM05D003281 ORTHO05D004128 9.1e-78 293.9 166 87.3
Cc02_g09680 Coffea canephora HOM05D003281 ORTHO05D004128 1.2e-77 293.5 190 77.4
AUR62015011 Chenopodium quinoa HOM05D003281 ORTHO05D004128 2.0e-77 292.7 166 84.9
TPR.G1398 Trifolium pratense HOM05D003281 ORTHO05D004128 2.0e-77 292.7 190 76.8
PSO017G0093 Papaver somniferum HOM05D003281 ORTHO05D004128 3.5e-77 292.0 166 84.9
TPR.G6549 Trifolium pratense HOM05D003281 ORTHO05D004128 3.5e-77 292.0 190 77.4
Gohir.A01G124000 Gossypium hirsutum HOM05D003281 ORTHO05D004128 4.5e-77 291.6 166 86.7
Medtr5g095820 Medicago truncatula HOM05D003281 ORTHO05D004128 5.9e-77 291.2 190 77.4
Rhsim04G0089900 Rhododendron simsii HOM05D003281 ORTHO05D004128 5.9e-77 291.2 166 85.5
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 5.9e-77 291.2 183 78.7
Medtr3g013710 Medicago truncatula HOM05D003281 ORTHO05D004128 7.7e-77 290.8 190 76.8
Cpa.g.sc30.140 Carica papaya HOM05D003281 ORTHO05D004128 1.0e-76 290.4 166 84.3
Cc01_g05380 Coffea canephora HOM05D003281 ORTHO05D004128 1.0e-76 290.4 190 76.8
Lalb_Chr07g0189731 Lupinus albus HOM05D003281 ORTHO05D004128 1.0e-76 290.4 190 76.3
EL10Ac5g10906 Beta vulgaris HOM05D003281 ORTHO05D004128 1.7e-76 289.7 166 84.9
Ca_18076_v3 Cicer arietinum L. HOM05D003281 ORTHO05D004128 1.7e-76 289.7 190 76.3
SalBow3G0238 Salvia bowleyana HOM05D003281 ORTHO05D004128 1.7e-76 289.7 190 76.3
Psat5g222920 Pisum sativum HOM05D003281 ORTHO05D004128 2.3e-76 289.3 190 76.3
SalBow1G2706 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.3e-76 289.3 190 75.8
Ah.01g022040 Amaranthus hybridus HOM05D003281 ORTHO05D004128 3.8e-76 288.5 166 84.9
ClCG03G004230 Citrullus lanatus HOM05D003281 ORTHO05D004128 5.0e-76 288.1 188 78.2
EL10Ac1g01734 Beta vulgaris HOM05D003281 ORTHO05D004128 6.5e-76 287.7 190 75.3
ATR0150G008 Amborella trichopoda HOM05D003281 ORTHO05D004128 8.6e-76 287.3 166 83.1
Eucgr.A00708 Eucalyptus grandis HOM05D003281 ORTHO05D004128 1.1e-75 287.0 166 83.1
THA.LOC104798558 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 1.5e-75 286.6 166 82.5
arahy.Tifrunner.gnm1.ann1.D0LQY1 Arachis hypogaea HOM05D003281 ORTHO05D004128 1.9e-75 286.2 166 83.7
Carub.0004s1674 Capsella rubella HOM05D003281 ORTHO05D004128 1.9e-75 286.2 166 83.7
Nitab4.5_0006246g0040 Nicotiana tabacum HOM05D003281 ORTHO05D004128 1.9e-75 286.2 155 89.0
SalBow1G7114 Salvia bowleyana HOM05D003281 ORTHO05D004128 1.9e-75 286.2 190 75.3
ECA232G1899 Erigeron canadensis HOM05D003281 ORTHO05D004128 2.5e-75 285.8 190 74.2
Eucgr.A00733 Eucalyptus grandis HOM05D003281 ORTHO05D004128 2.5e-75 285.8 166 82.5
PSO675G6428 Papaver somniferum HOM05D003281 ORTHO05D004128 3.2e-75 285.4 166 82.5
Lsat_1_v5_gn_4_97540 Lactuca sativa HOM05D003281 ORTHO05D004128 4.2e-75 285.0 190 75.3
AL4G31070 Arabidopsis lyrata HOM05D003281 ORTHO05D004128 5.5e-75 284.6 166 82.5
arahy.Tifrunner.gnm1.ann1.F6IBWZ Arachis hypogaea HOM05D003281 ORTHO05D004128 9.5e-75 283.9 166 83.1
AT2G35040 Arabidopsis thaliana HOM05D003281 ORTHO05D004128 1.2e-74 283.5 166 82.5
BcaB02g09485 Brassica carinata HOM05D003281 ORTHO05D004128 1.2e-74 283.5 166 81.3
Sc26g0004530 Simmondsia chinensis HOM05D003281 ORTHO05D004128 1.2e-74 283.5 166 82.5
HanXRQChr13g0406911 Helianthus annuus HOM05D003281 ORTHO05D004128 1.6e-74 283.1 190 73.7
Thhalv10016407m.g Eutrema salsugineum HOM05D003281 ORTHO05D004128 2.1e-74 282.7 166 81.9
THA.LOC104814352 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 6.1e-74 281.2 166 80.1
CDE06G0368 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 8.0e-74 280.8 166 81.3
Lj3g0002589 Lotus japonicus HOM05D003281 ORTHO05D004128 8.0e-74 280.8 190 74.2
Os08g0206600 Oryza sativa ssp. japonica HOM05D003281 ORTHO05D004128 1.0e-73 280.4 166 81.3
CARHR129210 Cardamine hirsuta HOM05D003281 ORTHO05D004128 1.8e-73 279.6 166 80.7
SEGI_14905 Sequoiadendron giganteum HOM05D003281 ORTHO05D004128 5.7e-72 274.6 190 71.6
CDE02G3604 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 7.5e-72 274.2 166 80.7
unitig_46.g18376 Utricularia gibba HOM05D003281 ORTHO05D004128 6.3e-71 271.2 166 78.3
Migut.B00724 Erythranthe guttata HOM05D003281 ORTHO05D004128 1.6e-69 266.5 173 76.9
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 3.5e-69 265.4 186 71.5
AUR62034379 Chenopodium quinoa HOM05D003281 ORTHO05D004128 1.0e-68 263.8 185 73.0
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 1.0e-68 263.8 160 78.8
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 1.0e-68 263.8 160 78.8
AUR62022320 Chenopodium quinoa HOM05D003281 ORTHO05D004128 1.3e-68 263.5 166 77.7
RcHm_v2.0_Chr1g0326741 Rosa chinensis HOM05D003281 ORTHO05D004128 5.6e-67 258.1 142 90.1
Zm00001eb413740 Zea mays HOM05D003281 ORTHO05D004128 5.6e-67 258.1 169 75.7
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 7.3e-67 257.7 156 78.2
Zm00001eb070920 Zea mays HOM05D003281 ORTHO05D004128 9.5e-67 257.3 166 73.5
Rhsim04G0092800 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.3e-65 252.7 172 75.0
SMO228G0099 Selaginella moellendorffii HOM05D003281 ORTHO05D004128 5.2e-65 251.5 190 64.7
Rhsim04G0089200 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.6e-64 249.2 178 73.0
Pp3c4_1350 Physcomitrium patens HOM05D003281 ORTHO05D004128 3.4e-64 248.8 190 64.2
Pp3c12_24590 Physcomitrium patens HOM05D003281 ORTHO05D004128 5.7e-64 248.1 190 63.7
Mapoly0032s0021 Marchantia polymorpha HOM05D003281 ORTHO05D004128 1.3e-63 246.9 166 69.9
CBR_g50928 Chara braunii HOM05D003281 ORTHO05D004128 8.6e-60 234.2 190 62.1
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 1.1e-59 233.8 137 81.8
HPP92_009499 Vanilla planifolia HOM05D003281 ORTHO05D004128 1.9e-59 233.0 166 71.1
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 4.3e-59 231.9 136 81.6
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 4.3e-59 231.9 139 80.6
FAN15G0156 Fragaria x ananassa HOM05D003281 ORTHO05D004128 4.3e-59 231.9 133 84.2
AagrBONN_evm.TU.Sc2ySwM_368.3406 Anthoceros agrestis HOM05D003281 ORTHO05D004128 1.1e-57 227.3 190 57.4
Rhsim05G0149200 Rhododendron simsii HOM05D003281 ORTHO05D004128 9.8e-56 220.7 129 82.9
Rhsim01G0111700 Rhododendron simsii HOM05D003281 ORTHO05D004128 6.4e-55 218.0 129 82.9
Cre12.g537581 Chlamydomonas reinhardtii HOM05D003281 ORTHO05D004128 6.0e-53 211.5 166 63.9
Rhsim01G0111500 Rhododendron simsii HOM05D003281 ORTHO05D004128 6.0e-53 211.5 191 60.2
MCO04G009 Micromonas commoda HOM05D003281 ORTHO05D004128 5.0e-52 208.4 190 56.8
Rhsim04G0114800 Rhododendron simsii HOM05D003281 ORTHO05D004128 8.6e-52 207.6 142 76.1
PRCOL_00001991 Prasinoderma coloniale HOM05D003281 ORTHO05D004128 2.0e-48 196.4 190 51.6
Hund10057 Selenicereus undatus HOM05D003281 ORTHO05D004128 5.8e-48 194.9 115 83.5
HPP92_009464 Vanilla planifolia HOM05D003281 ORTHO05D004128 5.4e-46 188.3 154 64.3
FAN06G3868 Fragaria x ananassa HOM05D003281 ORTHO05D004128 8.6e-44 181.0 166 60.8
BcaC02g11585 Brassica carinata HOM05D003281 ORTHO05D004128 1.5e-40 170.2 96 82.3
FAN03G3028 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.9e-39 166.0 168 56.5
Pp3s32_111 Physcomitrium patens HOM05D003281 ORTHO05D004128 7.3e-35 151.4 195 41.0
Psat5g186600 Pisum sativum HOM05D003281 ORTHO05D004128 6.2e-34 148.3 109 70.6
MD12G1088800 Malus domestica HOM05D003281 ORTHO05D004128 4.4e-32 142.1 90 78.9
MBI14_g44727_MAGBIO Magnolia biondii HOM05D003281 ORTHO05D004128 3.5e-29 132.5 73 90.4
SGA_v2.0_scaffold6G03254 Striga asiatica HOM05D003281 ORTHO05D004128 1.3e-26 124.0 73 80.8
SGA_v2.0_scaffold202G41492 Striga asiatica HOM05D003281 ORTHO05D004128 2.8e-26 122.9 73 79.5
Haze_26981 Corylus avellana HOM05D003281 ORTHO05D004128 6.2e-26 121.7 180 37.8
unitig_46.g18256 Utricularia gibba HOM05D003281 ORTHO05D004128 3.2e-22 109.4 73 71.2
Eucgr.A00699 Eucalyptus grandis HOM05D003281 ORTHO05D004128 3.9e-20 102.4 65 75.4
Eucgr.A00697 Eucalyptus grandis HOM05D003281 ORTHO05D004128 3.7e-18 95.9 65 70.8
BcaC02g07739 Brassica carinata HOM05D003281 ORTHO05D004128 2.2e-15 86.7 56 69.6
BolC4t27890H Brassica oleracea HOM05D003281 ORTHO05D032323 2.2e-15 86.7 56 69.6
unitig_46.g18255 Utricularia gibba HOM05D000840 ORTHO05D000670 4.9e-15 85.5 45 82.2
Potri.008G128301 Populus trichocarpa HOM05D003281 ORTHO05D004128 2.4e-14 83.2 46 82.6
BcaB06g28812 Brassica carinata HOM05D003281 ORTHO05D004128 2.5e-11 73.2 64 60.9
A04p26700 Brassica napus HOM05D003281 ORTHO05D032323 9.0e-09 64.7 37 73.0
Eucgr.A00705 Eucalyptus grandis HOM05D003281 ORTHO05D004128 2.5e-06 56.6 51 62.7


User provided reference genes

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