Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.1e-164 583.2 296 100.0
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 3.2e-159 565.1 296 97.0
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 7.0e-146 520.8 295 86.4
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 2.2e-136 489.2 290 81.4
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 2.2e-136 489.2 296 81.1
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 5.0e-136 488.0 296 80.7
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.4e-133 479.9 295 79.0
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 6.8e-133 477.6 291 80.1
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 2.6e-132 475.7 291 78.7
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 1.2e-129 466.8 293 78.5
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 2.7e-129 465.7 296 78.0
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 5.9e-129 464.5 296 77.7
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 7.7e-129 464.2 291 78.4
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.9e-128 462.2 290 79.3
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.1e-127 460.3 296 77.0
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.5e-127 459.9 296 76.4
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 5.6e-127 458.0 296 76.4
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.3e-127 457.6 290 74.8
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 1.6e-126 456.4 294 76.5
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 2.8e-126 455.7 296 75.7
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 6.1e-126 454.5 292 76.0
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 1.5e-124 449.9 290 75.9
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 7.5e-124 447.6 295 75.6
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 2.2e-123 446.0 295 75.3
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 6.4e-123 444.5 290 74.1
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 8.3e-123 444.1 290 72.1
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 8.3e-123 444.1 295 74.6
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 2.7e-121 439.1 307 70.0
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 2.7e-121 439.1 290 71.4
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 3.5e-121 438.7 290 71.0
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.3e-120 436.8 323 70.0
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 1.1e-119 433.7 291 72.2
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 1.9e-119 433.0 290 72.8
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 3.3e-119 432.2 292 72.3
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 4.3e-119 431.8 292 73.6
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 4.3e-119 431.8 306 69.3
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 4.3e-119 431.8 290 72.4
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.4e-117 426.8 290 71.4
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 6.8e-117 424.5 292 71.2
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 1.2e-116 423.7 297 72.4
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 5.8e-116 421.4 290 71.0
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 1.7e-115 419.9 297 72.1
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 2.2e-115 419.5 290 70.0
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 1.1e-114 417.2 292 70.5
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 1.9e-114 416.4 290 70.3
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 3.2e-114 415.6 290 72.4
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 5.4e-114 414.8 292 70.9
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 5.4e-114 414.8 292 69.9
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 6.0e-113 411.4 296 70.9
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 3.0e-112 409.1 291 70.4
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 3.9e-112 408.7 290 68.3
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 6.6e-112 407.9 290 68.6
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 2.5e-111 406.0 292 68.5
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 7.3e-111 404.4 290 67.2
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 7.3e-111 404.4 290 67.2
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 7.3e-111 404.4 300 67.3
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 3.6e-110 402.1 332 64.2
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 4.7e-110 401.7 293 66.9
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 1.4e-109 400.2 290 66.9
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 4.0e-109 398.7 288 68.8
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 5.2e-109 398.3 268 73.9
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.5e-108 396.7 307 64.2
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-107 393.7 276 70.7
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 1.3e-107 393.7 290 66.2
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 3.7e-107 392.1 292 67.1
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 1.4e-106 390.2 291 66.0
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 2.1e-105 386.3 358 56.4
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 6.0e-105 384.8 238 77.3
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 1.0e-104 384.0 296 64.2
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 6.6e-104 381.3 254 73.2
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 6.2e-102 374.8 290 64.5
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.1e-102 374.4 309 63.8
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 1.1e-101 374.0 293 63.1
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 2.3e-101 372.9 264 68.9
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 1.2e-100 370.5 290 62.1
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 5.8e-100 368.2 229 78.6
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 8.4e-99 364.4 296 62.5
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.1e-98 364.0 257 68.5
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.0e-96 357.5 211 84.4
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 2.1e-94 349.7 270 64.1
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 2.8e-94 349.4 289 61.2
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 8.9e-93 344.4 293 59.7
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 9.3e-90 334.3 280 60.7
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.8e-89 331.3 198 77.3
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 2.1e-86 323.2 243 66.7
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 6.2e-86 321.6 232 70.7
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 1.4e-85 320.5 232 69.4
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 2.2e-83 313.2 198 73.7
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 2.4e-82 309.7 198 74.2
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 3.3e-79 299.3 254 59.4
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 7.6e-76 288.1 173 77.5
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 1.7e-75 287.0 283 55.1
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 1.0e-72 277.7 290 53.4
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 2.3e-72 276.6 307 46.6
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.3e-70 270.8 291 45.4
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 2.1e-70 270.0 293 48.5
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 4.0e-69 265.8 186 70.4
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 9.0e-69 264.6 294 46.3
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 1.1e-66 257.7 197 63.5
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 2.5e-66 256.5 208 61.1
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 5.5e-58 228.8 187 62.0
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 7.2e-58 228.4 185 62.7
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.1e-57 226.9 182 61.0
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 4.8e-54 215.7 208 53.4
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 4.5e-52 209.1 256 42.6
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 3.8e-43 179.5 124 67.7
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.0e-40 171.4 138 62.3
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.8e-38 163.3 92 85.9
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.1e-37 161.4 92 81.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 2.4e-37 160.2 325 33.8
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 1.7e-35 154.1 93 81.7
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 2.1e-33 147.1 92 77.2
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 4.7e-33 146.0 147 55.1
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 1.0e-32 144.8 92 73.9
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.4e-29 134.4 125 56.0
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.2e-28 131.3 108 63.9
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 3.5e-28 129.8 87 70.1
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 2.1e-25 120.6 76 73.7
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 6.1e-25 119.0 171 38.0
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 5.2e-24 115.9 82 67.1
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 2.0e-23 114.0 72 77.8
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 2.6e-23 113.6 67 79.1
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 3.4e-23 113.2 97 60.8
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 9.8e-23 111.7 65 75.4
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.3e-22 111.3 123 48.0
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 5.4e-21 105.9 98 54.1
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.9e-19 100.1 90 55.6
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 8.6e-19 98.6 264 29.5
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-14 84.3 52 69.2
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 8.3e-14 82.0 60 65.0
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.5e-12 76.3 66 57.6
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 5.9e-12 75.9 52 65.4


User provided reference genes

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