Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 0.0e+00 2261.5 1154 100.0
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 0.0e+00 1804.6 1090 86.8
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 0.0e+00 1627.8 1163 73.6
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 0.0e+00 1622.8 1163 73.3
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 0.0e+00 1323.9 973 72.8
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 0.0e+00 1244.2 1160 57.6
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 0.0e+00 1224.2 1172 57.7
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 0.0e+00 1221.8 1173 57.7
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 0.0e+00 1169.8 1160 54.7
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 0.0e+00 1147.9 1161 54.0
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 0.0e+00 1120.5 1163 53.1
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 0.0e+00 1110.5 1160 53.4
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 0.0e+00 1107.0 1165 52.6
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 0.0e+00 1095.1 1167 51.7
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 0.0e+00 1091.6 1162 51.9
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 0.0e+00 1087.8 1146 53.5
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 0.0e+00 1080.1 1159 51.4
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 2.7e-310 1068.9 1192 50.3
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.5e-305 1053.1 1191 49.9
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.4e-303 1046.6 1168 52.4
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 4.6e-302 1041.6 1155 51.2
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 6.0e-302 1041.2 1159 50.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.2e-297 1026.9 1163 50.1
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 1.4e-295 1020.0 1165 49.2
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.9e-295 1019.6 1158 50.3
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 6.6e-293 1011.1 1167 50.4
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.6e-291 1005.4 1167 49.8
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 4.4e-289 998.4 1093 51.6
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 3.6e-283 978.8 1165 48.3
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.2e-281 973.8 1162 47.8
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 6.4e-280 968.0 1196 48.5
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.5e-278 962.2 1163 48.3
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 7.9e-278 961.1 1160 49.1
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 2.3e-277 959.5 1182 48.0
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 1.6e-275 953.4 1162 48.2
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 4.0e-274 948.7 1178 48.0
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 9.0e-274 947.6 1165 48.0
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 9.6e-268 927.5 1160 47.6
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 4.5e-265 918.7 1159 45.9
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 6.1e-262 908.3 1162 45.4
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 1.8e-261 906.7 942 53.6
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 2.4e-258 896.3 1050 50.3
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 2.6e-257 892.9 996 50.3
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 6.7e-253 878.2 1161 45.0
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.5e-249 865.5 1167 42.8
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.7e-248 863.6 1167 42.7
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.7e-248 863.6 1161 45.0
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 6.5e-248 861.7 1167 43.7
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 4.2e-247 859.0 1160 43.7
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 5.5e-247 858.6 1174 44.1
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 1.4e-245 854.0 1157 43.3
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 6.3e-243 845.1 1178 43.4
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 8.2e-243 844.7 1178 43.3
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 7.0e-242 841.6 1155 43.6
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 1.6e-241 840.5 1160 43.3
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 4.5e-241 839.0 1160 43.0
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 4.5e-241 839.0 1178 43.4
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 4.5e-241 839.0 1178 43.4
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 5.9e-241 838.6 1174 43.5
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 1.0e-240 837.8 1166 43.7
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 1.5e-239 833.9 1159 43.6
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 1.6e-238 830.5 907 51.0
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 8.0e-238 828.2 1261 42.7
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 1.8e-237 827.0 1163 42.6
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 2.0e-236 823.5 1177 42.9
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 2.0e-236 823.5 1162 42.4
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 3.3e-236 822.8 1165 42.0
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 5.7e-236 822.0 1163 42.4
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 5.7e-236 822.0 1169 43.3
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 3.2e-231 806.2 1150 42.8
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 1.3e-227 794.3 1161 41.6
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 5.4e-226 788.9 1168 42.3
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 7.0e-226 788.5 1164 42.2
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 4.5e-225 785.8 1162 41.4
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 2.5e-223 780.0 1199 42.1
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 1.2e-222 777.7 1164 41.2
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 6.8e-221 771.9 1166 41.2
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 2.0e-217 760.4 1164 41.5
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 8.0e-214 748.4 1158 40.2
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 9.2e-210 734.9 1161 39.0
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 6.6e-208 728.8 1156 41.1
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.0e-204 717.2 1166 38.7
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 4.3e-199 699.5 1214 38.1
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 1.2e-193 681.4 1161 39.4
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 4.6e-193 679.5 1114 38.8
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.4e-188 663.3 970 41.5
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 9.9e-188 661.8 1158 38.3
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.7e-187 661.0 961 41.7
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.9e-187 660.2 899 44.6
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 4.2e-178 629.8 1142 38.7
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 9.9e-172 608.6 1211 35.0
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 2.1e-158 564.3 665 49.6
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 5.5e-154 549.7 1263 31.8
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 6.3e-142 509.6 902 36.5
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 3.9e-136 490.3 883 36.6
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 5.1e-136 490.0 1259 30.3
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 5.9e-116 423.3 805 37.6
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 2.3e-104 384.8 426 51.6
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 1.1e-93 349.4 325 58.2
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 1.0e-91 342.8 301 61.1
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 3.0e-91 341.3 300 62.0
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 3.9e-91 340.9 301 61.5
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 8.6e-91 339.7 300 61.7
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 7.3e-90 336.7 430 44.7
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 6.2e-89 333.6 300 60.3
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 9.2e-85 319.7 1266 25.4
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 3.1e-80 304.7 1270 24.1
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 4.4e-79 300.8 301 55.8
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 2.9e-78 298.1 275 60.7
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 1.2e-73 282.7 312 52.2
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 2.8e-73 281.6 312 52.2
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 5.8e-71 273.9 1156 25.3
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 1.3e-70 272.7 357 47.3
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.1e-69 269.6 237 61.2
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.8e-65 255.0 237 57.8
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 3.1e-64 251.5 175 73.1
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 1.2e-55 223.0 289 45.3
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.3e-54 219.5 176 65.3
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 3.8e-54 218.0 202 56.9
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 2.4e-53 215.3 887 25.3
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.2e-53 214.9 175 64.6
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 4.2e-53 214.5 175 62.9
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.1e-52 212.2 419 34.6
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 3.0e-51 208.4 187 58.3
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.5e-50 206.1 509 31.2
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 6.9e-48 197.2 168 63.1
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.2e-45 188.0 308 39.9
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.1e-40 171.8 308 37.7
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 4.3e-34 151.4 165 55.2
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 3.1e-32 145.2 361 28.0
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 9.0e-32 143.7 229 39.3
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 2.2e-30 139.0 241 36.5
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 7.2e-29 134.0 434 30.0
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.7e-27 127.5 253 34.4
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 4.2e-21 108.2 124 50.0
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 7.2e-21 107.5 108 56.5
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.1e-20 105.9 125 49.6
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.2e-14 85.9 87 56.3
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 7.2e-13 80.9 80 50.0
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 6.1e-12 77.8 129 41.9
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 6.1e-12 77.8 111 42.3
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 8.0e-12 77.4 132 34.1
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 8.8e-11 73.9 64 60.9
BcaB03g11656 Brassica carinata HOM05D004959 ORTHO05D005961 7.4e-10 70.9 129 34.9
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 6.3e-09 67.8 46 58.7
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 8.2e-09 67.4 50 54.0
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 1.4e-08 66.6 46 56.5
Dinv16431 Davidia involucrata HOM05D004959 ORTHO05D005961 3.1e-08 65.5 102 44.1
Dinv16432 Davidia involucrata HOM05D014227 ORTHO05D000563 6.5e-06 57.8 48 66.7


User provided reference genes

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