Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 6.1e-46 187.2 99 100.0
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 5.0e-40 167.5 99 91.9
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 4.7e-30 134.4 99 72.7
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 4.9e-27 124.4 98 70.4
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 5.4e-26 120.9 100 71.0
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.2e-22 109.8 99 64.6
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 2.1e-22 109.0 103 64.1
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.8e-22 108.6 103 64.1
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.8e-22 108.6 103 64.1
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.8e-22 108.6 103 64.1
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 2.8e-22 108.6 103 64.1
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 3.6e-22 108.2 98 61.2
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 6.2e-22 107.5 103 63.1
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 5.2e-21 104.4 99 61.6
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.4e-20 101.3 99 58.6
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 7.5e-20 100.5 99 58.6
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.3e-19 99.8 99 59.6
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.7e-19 99.4 94 58.5
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 3.7e-19 98.2 103 53.4
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 4.9e-19 97.8 102 54.9
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 4.9e-19 97.8 94 53.2
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 4.9e-19 97.8 88 59.1
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.9e-19 97.8 99 55.6
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 6.4e-19 97.4 96 59.4
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 6.4e-19 97.4 96 59.4
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 6.4e-19 97.4 102 54.9
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 8.3e-19 97.1 100 60.0
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.4e-18 95.5 99 55.6
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 2.4e-18 95.5 100 57.0
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 3.2e-18 95.1 99 55.6
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 3.2e-18 95.1 99 58.6
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 5.4e-18 94.4 102 54.9
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 5.4e-18 94.4 101 55.4
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 7.0e-18 94.0 99 53.5
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 7.0e-18 94.0 101 56.4
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 7.0e-18 94.0 105 57.1
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 9.2e-18 93.6 103 57.3
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 1.6e-17 92.8 94 57.4
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 1.6e-17 92.8 96 56.2
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.6e-17 92.8 99 57.6
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 2.0e-17 92.4 100 57.0
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.0e-17 92.4 100 55.0
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.0e-17 92.4 99 53.5
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 2.7e-17 92.0 103 52.4
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 3.5e-17 91.7 100 55.0
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 3.5e-17 91.7 100 56.0
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 7.8e-17 90.5 102 57.8
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 7.8e-17 90.5 109 53.2
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.0e-16 90.1 100 54.0
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.0e-16 90.1 100 54.0
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 2.3e-16 89.0 93 47.3
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 3.0e-16 88.6 108 56.5
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 3.9e-16 88.2 99 51.5
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 3.9e-16 88.2 103 55.3
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 6.6e-16 87.4 90 56.7
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 6.6e-16 87.4 106 50.0
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 6.6e-16 87.4 101 50.5
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.6e-16 87.4 95 52.6
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 8.6e-16 87.0 101 50.5
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 8.6e-16 87.0 99 54.5
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 8.6e-16 87.0 99 48.5
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 1.1e-15 86.7 96 54.2
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 1.5e-15 86.3 99 50.5
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 1.5e-15 86.3 101 52.5
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.9e-15 85.9 101 54.5
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.9e-15 85.9 100 52.0
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 7.3e-15 84.0 99 48.5
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.6e-14 81.6 100 49.0
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 4.7e-14 81.3 105 54.3
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 6.2e-14 80.9 94 52.1
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 6.2e-14 80.9 98 49.0
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 8.1e-14 80.5 91 52.7
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 8.1e-14 80.5 107 50.5
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 8.1e-14 80.5 104 51.9
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 1.4e-13 79.7 57 73.7
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.4e-13 79.7 62 62.9
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.8e-13 79.3 98 46.9
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.3e-13 79.0 99 52.5
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 3.1e-13 78.6 94 50.0
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 6.8e-13 77.4 92 48.9
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.2e-12 76.6 72 59.7
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 1.5e-12 76.3 78 56.4
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 2.0e-12 75.9 104 43.3
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 2.0e-12 75.9 104 43.3
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 2.0e-12 75.9 104 43.3
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 2.0e-12 75.9 104 43.3
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.0e-12 75.9 101 49.5
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.6e-12 75.5 99 45.5
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 2.6e-12 75.5 101 47.5
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.4e-12 75.1 103 44.7
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 5.8e-12 74.3 104 41.3
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 5.8e-12 74.3 104 41.3
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 5.8e-12 74.3 98 45.9
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 9.9e-12 73.6 100 49.0
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 1.3e-11 73.2 106 45.3
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.7e-11 72.8 99 42.4
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 2.9e-11 72.0 77 55.8
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 2.9e-11 72.0 100 51.0
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 3.7e-11 71.6 99 46.5
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 4.9e-11 71.2 100 46.0
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 1.4e-10 69.7 99 45.5
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 1.9e-10 69.3 106 44.3
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 1.9e-10 69.3 106 44.3
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 2.4e-10 68.9 86 46.5
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 2.4e-10 68.9 86 46.5
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 2.4e-10 68.9 86 46.5
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 2.4e-10 68.9 95 46.3
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 2.4e-10 68.9 89 44.9
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 2.4e-10 68.9 69 56.5
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 3.2e-10 68.6 97 44.3
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 3.2e-10 68.6 70 57.1
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 3.2e-10 68.6 63 58.7
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.2e-10 68.6 89 50.6
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.2e-10 68.6 79 51.9
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 4.1e-10 68.2 109 39.4
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 9.2e-10 67.0 100 44.0
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 2.7e-09 65.5 56 62.5
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 3.5e-09 65.1 99 44.4
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 6.0e-09 64.3 74 51.4
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 7.8e-09 63.9 108 45.4
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.0e-08 63.5 101 46.5
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 1.7e-08 62.8 98 39.8
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 1.7e-08 62.8 98 39.8
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 1.7e-08 62.8 98 39.8
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 1.7e-08 62.8 98 39.8
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 1.7e-08 62.8 98 39.8
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 6.6e-08 60.8 73 56.2
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 6.6e-08 60.8 100 45.0
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.9e-07 59.3 99 42.4
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 1.9e-07 59.3 94 43.6
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 9.5e-07 57.0 91 45.1
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 1.2e-06 56.6 96 47.9
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 1.2e-06 56.6 96 47.9
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 1.2e-06 56.6 102 48.0
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 1.6e-06 56.2 96 47.9
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 2.1e-06 55.8 97 41.2
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 2.1e-06 55.8 96 46.9
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 2.1e-06 55.8 97 44.3
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 2.8e-06 55.5 62 53.2
Sp1g15090 Schrenkiella parvula HOM05D009829 ORTHO05D012418 2.8e-06 55.5 100 44.0
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 3.6e-06 55.1 68 50.0
EL10Ac4g08366 Beta vulgaris HOM05D005059 ORTHO05D004248 8.1e-06 53.9 56 53.6
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 8.1e-06 53.9 96 46.9


User provided reference genes

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