Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 1.9e-68 262.3 129 100.0
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 3.4e-20 102.1 155 48.4
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 8.3e-19 97.4 147 48.3
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 5.0e-16 88.2 154 41.6
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 7.3e-15 84.3 153 38.6
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 9.5e-15 84.0 151 42.4
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 1.2e-14 83.6 147 42.9
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 1.6e-14 83.2 141 42.6
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 1.6e-14 83.2 153 37.3
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 2.8e-14 82.4 154 40.3
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 2.8e-14 82.4 159 39.0
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 4.7e-14 81.6 153 39.9
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 4.7e-14 81.6 151 42.4
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 4.7e-14 81.6 151 41.1
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 6.2e-14 81.3 154 42.2
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 8.0e-14 80.9 154 37.7
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 8.0e-14 80.9 144 42.4
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 8.0e-14 80.9 148 40.5
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 1.1e-13 80.5 150 38.7
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 1.4e-13 80.1 154 42.2
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 1.4e-13 80.1 154 40.9
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 5.2e-13 78.2 154 37.7
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.5e-12 76.6 151 42.4
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.5e-12 76.6 151 42.4
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 2.0e-12 76.3 151 39.7
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.6e-12 75.9 151 42.4
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 2.6e-12 75.9 151 41.7
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.4e-12 75.5 151 41.7
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 3.4e-12 75.5 155 37.4
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 4.4e-12 75.1 154 37.7
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 5.8e-12 74.7 154 40.3
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 5.8e-12 74.7 150 41.3
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 5.8e-12 74.7 157 37.6
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 7.5e-12 74.3 153 35.9
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 1.7e-11 73.2 147 39.5
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 2.9e-11 72.4 149 38.3
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 2.9e-11 72.4 162 35.2
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 4.9e-11 71.6 160 36.9
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 6.4e-11 71.2 153 34.6
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 6.4e-11 71.2 85 50.6
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 6.4e-11 71.2 149 40.3
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 1.1e-10 70.5 155 37.4
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 1.1e-10 70.5 154 37.0
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 1.9e-10 69.7 153 32.7
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 1.9e-10 69.7 149 36.2
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 2.4e-10 69.3 155 38.1
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 3.2e-10 68.9 160 36.2
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 4.1e-10 68.6 158 36.7
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 5.4e-10 68.2 155 36.8
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 7.0e-10 67.8 153 37.3
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 1.6e-09 66.6 34 85.3
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 2.0e-09 66.2 153 36.6
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 2.0e-09 66.2 34 79.4
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 2.7e-09 65.9 146 37.0
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 2.7e-09 65.9 153 35.9
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.5e-09 65.5 155 36.8
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 3.5e-09 65.5 34 85.3
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 3.5e-09 65.5 34 85.3
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 4.6e-09 65.1 34 82.4
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 4.6e-09 65.1 34 82.4
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 4.6e-09 65.1 34 82.4
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 1.0e-08 63.9 86 45.3
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 1.3e-08 63.5 151 35.1
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.3e-08 63.5 34 79.4
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 1.3e-08 63.5 34 79.4
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 1.3e-08 63.5 157 35.7
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 1.3e-08 63.5 34 79.4
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 1.7e-08 63.2 34 82.4
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 2.3e-08 62.8 34 79.4
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 2.3e-08 62.8 35 77.1
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 5.0e-08 61.6 34 76.5
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 5.0e-08 61.6 34 73.5
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 5.0e-08 61.6 34 73.5
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 5.0e-08 61.6 138 35.5
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 5.0e-08 61.6 152 35.5
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 5.0e-08 61.6 34 73.5
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 8.6e-08 60.8 142 33.1
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 8.6e-08 60.8 35 74.3
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 8.6e-08 60.8 35 74.3
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 1.1e-07 60.5 34 70.6
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 1.1e-07 60.5 34 70.6
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 1.1e-07 60.5 34 70.6
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 1.1e-07 60.5 34 70.6
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 1.1e-07 60.5 34 70.6
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.1e-07 60.5 34 76.5
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 1.5e-07 60.1 34 70.6
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 1.5e-07 60.1 34 70.6
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 1.5e-07 60.1 34 79.4
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 1.5e-07 60.1 150 30.7
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 1.9e-07 59.7 34 73.5
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 1.9e-07 59.7 34 73.5
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 1.9e-07 59.7 34 70.6
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 2.5e-07 59.3 34 70.6
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 2.5e-07 59.3 33 78.8
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 3.3e-07 58.9 34 70.6
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 4.3e-07 58.5 151 33.1
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 4.3e-07 58.5 33 78.8
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 9.5e-07 57.4 35 68.6
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 1.2e-06 57.0 34 70.6
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 2.1e-06 56.2 34 67.6
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 3.6e-06 55.5 34 61.8
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 6.2e-06 54.7 34 67.6
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 6.2e-06 54.7 34 64.7


User provided reference genes

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