Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 1.3e-152 543.9 471 100.0
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 4.7e-139 498.8 384 97.4
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 3.2e-127 459.5 384 88.5
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 3.8e-120 436.0 381 87.1
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 4.3e-100 369.4 383 80.4
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.3e-100 369.4 383 80.4
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 6.2e-99 365.5 388 79.6
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.4e-98 364.4 384 80.5
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 9.0e-98 361.7 385 76.9
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.5e-97 360.9 384 79.9
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 2.0e-97 360.5 387 76.0
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.0e-97 360.5 384 80.2
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 1.3e-96 357.8 387 77.5
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 2.2e-96 357.1 386 79.3
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 5.5e-95 352.4 389 75.3
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 1.6e-94 350.9 387 77.8
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.5e-92 344.4 387 76.5
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.9e-92 344.0 388 79.1
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.7e-92 342.4 388 76.3
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 9.7e-92 341.7 386 75.9
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 9.7e-92 341.7 387 77.3
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 9.7e-92 341.7 384 72.9
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 1.6e-91 340.9 385 73.5
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 3.7e-91 339.7 389 77.1
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 2.4e-90 337.0 387 77.5
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 3.1e-90 336.7 388 75.5
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 2.0e-89 334.0 388 72.4
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 3.4e-89 333.2 387 74.2
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 5.9e-89 332.4 383 77.8
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 7.7e-89 332.0 387 76.7
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.3e-88 331.3 386 78.0
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 1.7e-88 330.9 387 73.6
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.2e-88 330.5 383 76.8
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.8e-88 329.7 385 73.8
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 5.0e-88 329.3 386 72.8
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 6.5e-88 328.9 383 74.7
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 8.5e-88 328.6 386 78.0
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.4e-87 327.8 385 75.8
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.4e-87 327.8 351 77.5
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 4.2e-87 326.2 385 76.1
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 5.5e-87 325.9 385 75.3
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 1.6e-86 324.3 386 74.6
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 3.6e-86 323.2 387 76.5
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 1.1e-84 318.2 322 80.7
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 1.5e-84 317.8 385 74.0
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 2.5e-84 317.0 384 73.7
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 3.3e-84 316.6 387 75.2
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 5.7e-84 315.8 359 77.4
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 1.7e-83 314.3 387 76.0
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 2.2e-83 313.9 323 79.9
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.2e-83 313.9 385 73.2
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 4.1e-82 309.7 385 72.7
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 9.1e-82 308.5 385 73.2
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.2e-81 308.1 385 73.5
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 3.4e-81 306.6 386 74.9
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 5.9e-81 305.8 384 74.5
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 5.9e-81 305.8 385 74.0
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 7.7e-81 305.4 358 74.0
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.7e-80 304.3 385 70.9
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.8e-80 303.1 383 73.1
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 5.0e-80 302.8 383 73.1
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 8.5e-80 302.0 385 73.0
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.1e-79 301.6 383 70.0
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 1.9e-79 300.8 393 68.2
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.5e-79 300.4 388 72.4
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.5e-79 300.4 383 70.0
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 3.2e-79 300.1 383 68.9
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.2e-79 300.1 383 68.4
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.7e-78 297.0 385 70.1
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.7e-78 296.2 388 68.0
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 7.9e-78 295.4 383 70.2
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.0e-77 295.0 385 73.5
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.4e-77 294.7 383 71.3
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.0e-77 293.5 385 72.5
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.6e-76 290.4 369 74.0
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 3.3e-76 290.0 389 68.6
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 3.3e-76 290.0 389 69.4
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 4.4e-76 289.7 385 71.7
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 4.4e-76 289.7 385 72.5
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 5.7e-76 289.3 385 71.9
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 5.7e-76 289.3 383 70.5
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.3e-75 288.1 385 71.7
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 2.8e-75 287.0 375 68.0
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 2.8e-75 287.0 385 71.7
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 3.7e-75 286.6 369 72.6
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 8.2e-75 285.4 374 67.6
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 1.5e-73 281.2 331 74.9
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 7.7e-73 278.9 388 69.6
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 1.3e-72 278.1 389 65.8
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 2.9e-72 276.9 388 64.4
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.1e-71 275.0 384 70.3
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 2.5e-71 273.9 397 67.0
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 4.2e-71 273.1 397 66.8
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 4.2e-71 273.1 394 65.5
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 5.5e-71 272.7 385 71.2
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 9.4e-71 271.9 394 69.3
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 2.1e-70 270.8 396 65.9
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 4.7e-70 269.6 389 69.2
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 6.1e-70 269.2 382 69.1
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 8.0e-70 268.9 329 72.9
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 1.0e-69 268.5 383 68.4
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 8.8e-69 265.4 385 67.3
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 8.8e-69 265.4 389 66.1
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 2.6e-68 263.8 396 64.6
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 9.7e-68 261.9 396 64.9
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 9.7e-68 261.9 396 64.9
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 9.7e-68 261.9 396 64.9
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 6.3e-67 259.2 396 64.9
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 6.3e-67 259.2 396 64.9
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 4.1e-66 256.5 392 69.9
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 5.3e-66 256.1 391 66.0
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 7.0e-66 255.8 188 69.1
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 3.5e-65 253.4 383 67.9
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 5.9e-65 252.7 392 67.6
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 5.0e-64 249.6 384 67.4
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 8.5e-64 248.8 391 69.8
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 1.9e-63 247.7 388 67.5
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.2e-62 245.0 397 68.0
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 6.1e-62 242.7 348 65.8
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 8.0e-62 242.3 386 61.7
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 2.3e-61 240.7 395 67.8
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 2.3e-61 240.7 395 67.8
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 2.6e-60 237.3 329 70.5
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 7.0e-58 229.2 388 67.5
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 9.1e-58 228.8 392 56.6
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 1.2e-57 228.4 385 66.5
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 9.4e-55 218.8 388 58.0
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 8.8e-53 212.2 389 65.3
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 3.1e-50 203.8 387 64.3
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 9.1e-50 202.2 389 46.3
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 7.7e-49 199.1 273 72.9
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 2.9e-48 197.2 381 64.6
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.1e-47 195.3 390 63.8
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.1e-47 195.3 390 63.8
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 4.2e-47 193.4 375 40.8
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 5.5e-47 193.0 390 63.6
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 1.5e-44 184.9 395 53.7
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.7e-43 181.4 327 65.7
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 4.9e-43 179.9 286 72.4
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 8.3e-43 179.1 398 56.8
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 1.4e-42 178.3 298 65.1
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 1.8e-42 177.9 280 76.4
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 5.4e-42 176.4 378 61.6
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 2.9e-40 170.6 341 51.9
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 3.9e-40 170.2 195 54.4
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 2.5e-39 167.5 192 53.1
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 9.5e-39 165.6 399 55.1
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 9.5e-39 165.6 399 56.6
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 8.0e-38 162.5 256 72.3
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.4e-37 161.8 173 52.6
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 5.8e-36 156.4 120 66.7
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.1e-34 152.1 393 49.1
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 1.2e-33 148.7 250 79.2
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.0e-33 147.9 402 54.5
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 7.8e-33 146.0 400 45.2
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.9e-31 141.4 341 54.0
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 4.1e-26 123.6 118 70.3
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 1.7e-24 118.2 100 63.0
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.5e-23 115.2 104 60.6
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 2.3e-21 107.8 54 98.1
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 5.8e-20 103.2 54 94.4
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 7.6e-20 102.8 172 45.3
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 1.3e-19 102.1 253 58.9
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 1.9e-18 98.2 111 50.5
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 2.4e-18 97.8 120 46.7
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 1.5e-15 88.6 188 33.5
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.1e-13 82.4 114 61.4
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 2.9e-11 74.3 157 32.5
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 7.1e-10 69.7 87 49.4
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 2.3e-08 64.7 51 60.8
HanXRQChr04g0116951 Helianthus annuus HOM05D004193 ORTHO05D004862 5.1e-08 63.5 154 81.8
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 2.5e-07 61.2 50 58.0


User provided reference genes

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