Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 3.4e-221 771.5 440 100.0
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 4.6e-194 681.4 435 90.8
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 4.8e-175 618.2 442 81.0
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.0e-169 600.5 420 83.1
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 6.7e-153 544.7 447 76.1
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 3.9e-137 492.3 434 73.3
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.2e-122 444.1 455 59.6
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 2.2e-119 433.3 386 64.8
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 1.1e-118 431.0 455 59.1
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 9.1e-118 427.9 387 61.0
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 4.5e-117 425.6 458 60.5
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 3.8e-116 422.5 448 57.6
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.9e-115 420.2 472 57.2
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 6.1e-114 415.2 454 57.7
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 1.0e-113 414.5 459 59.5
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 1.8e-113 413.7 457 59.3
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.4e-110 404.1 455 54.3
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.2e-110 402.9 330 68.8
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 3.5e-109 399.4 353 64.6
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 1.0e-108 397.9 456 60.5
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 6.6e-108 395.2 450 55.1
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 6.6e-108 395.2 486 52.9
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 4.3e-107 392.5 451 56.5
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 5.6e-107 392.1 380 60.0
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 6.1e-106 388.7 453 57.4
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 8.9e-105 384.8 456 55.5
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 9.8e-104 381.3 380 60.8
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 1.7e-103 380.6 451 59.0
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 7.8e-101 371.7 514 50.4
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 4.3e-99 365.9 447 56.6
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 4.3e-99 365.9 325 63.7
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 9.5e-99 364.8 365 58.4
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 6.8e-97 358.6 472 52.3
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 1.5e-96 357.5 443 56.0
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 4.4e-96 355.9 483 51.6
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 8.3e-95 351.7 333 61.6
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 8.3e-95 351.7 474 49.4
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 3.2e-94 349.7 330 62.4
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 3.2e-94 349.7 290 70.0
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 3.2e-94 349.7 455 52.7
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 3.2e-94 349.7 333 61.3
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 4.1e-94 349.4 389 56.6
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 5.4e-94 349.0 450 52.7
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 1.6e-93 347.4 400 56.0
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 2.1e-93 347.1 315 63.8
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 3.5e-93 346.3 451 54.1
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 1.0e-92 344.7 447 53.7
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 1.3e-92 344.4 399 52.4
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 5.1e-92 342.4 393 52.7
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.9e-91 340.5 476 48.7
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.5e-91 340.1 450 51.8
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 7.3e-91 338.6 459 49.2
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.2e-90 337.8 459 51.0
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.1e-90 337.0 372 56.2
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.4e-89 334.3 447 51.2
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 1.8e-89 334.0 413 51.8
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 2.3e-89 333.6 371 56.6
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 4.0e-89 332.8 447 50.6
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 8.9e-89 331.6 433 54.5
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 3.4e-88 329.7 330 60.3
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 2.9e-87 326.6 353 55.8
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 2.4e-86 323.6 392 52.8
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 4.1e-86 322.8 420 50.2
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.6e-85 320.9 441 50.3
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.1e-85 320.5 452 49.1
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.5e-85 319.7 447 49.0
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.3e-84 317.8 501 44.5
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.3e-83 313.2 321 57.0
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 4.3e-83 312.8 307 59.6
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 1.2e-82 311.2 465 48.2
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 3.6e-82 309.7 444 52.0
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.6e-82 309.7 476 48.1
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 6.2e-82 308.9 333 56.5
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 8.9e-81 305.1 341 54.0
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 2.0e-80 303.9 335 57.0
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 4.4e-80 302.8 435 48.7
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.4e-78 297.7 345 53.9
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 6.0e-77 292.4 426 49.1
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 6.0e-77 292.4 334 55.7
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.3e-76 291.2 368 50.8
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.5e-75 287.7 323 56.7
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 1.5e-75 287.7 493 44.4
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.4e-73 281.2 303 55.4
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 2.4e-73 280.4 437 47.6
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 1.2e-72 278.1 404 46.3
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 3.4e-72 276.6 502 41.0
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 7.1e-70 268.9 333 51.1
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 2.7e-69 266.9 189 74.6
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 3.5e-69 266.5 400 44.8
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 1.0e-68 265.0 284 52.8
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 1.3e-68 264.6 351 55.3
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 3.0e-68 263.5 286 56.6
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 2.5e-67 260.4 398 44.0
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 4.3e-67 259.6 322 51.6
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 4.3e-67 259.6 301 53.5
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 2.1e-66 257.3 447 44.1
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.4e-65 254.6 276 57.6
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.4e-65 254.6 333 50.5
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 3.1e-65 253.4 231 61.5
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 2.6e-64 250.4 271 56.8
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 3.4e-64 250.0 309 51.8
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 5.8e-64 249.2 308 52.3
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 3.8e-63 246.5 290 53.1
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 3.8e-63 246.5 302 52.3
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 4.9e-63 246.1 310 51.3
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 5.4e-62 242.7 304 53.0
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 5.4e-62 242.7 304 53.0
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 2.1e-61 240.7 267 55.8
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 1.0e-60 238.4 308 50.3
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.3e-60 238.0 338 47.3
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 1.8e-60 237.7 296 51.7
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 2.8e-58 230.3 320 50.0
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 1.1e-57 228.4 271 52.8
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 9.0e-57 225.3 247 53.8
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 7.6e-56 222.2 307 45.9
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 8.4e-55 218.8 324 45.4
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 7.6e-48 195.7 355 41.4
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.9e-47 193.7 207 54.6
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 1.9e-46 191.0 184 60.9
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 5.5e-46 189.5 272 47.8
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 3.0e-44 183.7 287 43.6
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 6.7e-44 182.6 235 46.8
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.6e-37 161.4 243 44.9
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 1.6e-37 161.4 164 56.1
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 4.6e-37 159.8 376 35.1
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 3.9e-36 156.8 377 35.5
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 2.0e-35 154.5 152 65.1
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 2.2e-34 151.0 136 66.2
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 6.9e-33 146.0 251 41.8
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 5.9e-32 142.9 137 59.1
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 9.4e-30 135.6 330 37.3
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 4.7e-29 133.3 446 30.9
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 2.0e-27 127.9 189 43.9
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.3e-26 125.2 189 43.9
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.7e-26 124.8 71 78.9
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.3e-26 122.9 69 79.7
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 6.3e-26 122.9 71 77.5
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 1.8e-25 121.3 159 48.4
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 3.1e-25 120.6 141 56.0
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 2.0e-24 117.9 158 46.2
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.0e-24 117.9 94 63.8
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.5e-24 116.7 70 78.6
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.3e-23 115.2 94 62.8
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 2.7e-21 107.5 207 37.7
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 3.6e-21 107.1 258 36.4
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 3.0e-20 104.0 99 55.6
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.7e-20 102.8 271 34.7
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.1e-17 95.5 108 49.1
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 7.0e-17 92.8 89 60.7
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.3e-15 88.6 99 52.5
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.3e-15 88.6 240 33.8
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.0e-12 79.0 140 42.1
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.4e-12 78.6 140 42.1
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.4e-12 78.6 140 42.1
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.0e-11 74.7 155 38.1
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 5.7e-11 73.2 187 33.2
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 1.3e-10 72.0 94 37.2
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 3.7e-10 70.5 162 35.2
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 3.1e-09 67.4 105 45.7
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 5.4e-09 66.6 105 43.8
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.7e-07 61.6 78 46.2
CSS0043633 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 6.5e-07 59.7 84 47.6
CSS0023566 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.2e-06 57.4 96 45.8


User provided reference genes

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