Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 7.8e-183 643.7 322 100.0
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 9.0e-131 470.7 343 74.9
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 2.2e-108 396.4 377 58.6
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 5.9e-106 388.3 405 54.3
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 3.2e-104 382.5 392 53.6
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 1.2e-103 380.6 394 54.6
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 1.8e-102 376.7 393 54.5
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 4.4e-101 372.1 395 52.7
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 2.2e-100 369.8 395 52.9
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 4.5e-98 362.1 383 52.5
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 3.1e-91 339.3 423 47.0
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.5e-90 335.9 399 49.4
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 3.8e-89 332.4 390 50.8
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.1e-88 330.9 398 49.2
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 2.1e-87 326.6 401 48.4
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.4e-86 323.9 368 50.0
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 6.8e-86 321.6 368 49.7
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.2e-85 320.9 368 50.0
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 5.7e-85 318.5 388 45.9
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 6.3e-84 315.1 361 48.5
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 3.1e-83 312.8 414 43.5
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 4.1e-83 312.4 388 46.6
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 7.0e-83 311.6 413 43.8
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 2.0e-82 310.1 388 45.4
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 3.5e-82 309.3 398 44.7
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 5.9e-82 308.5 391 46.3
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 6.5e-81 305.1 399 47.6
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 2.5e-80 303.1 412 44.4
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 3.2e-80 302.8 381 48.8
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 3.2e-80 302.8 427 42.4
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 6.1e-79 298.5 362 45.3
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.8e-78 297.0 373 47.7
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 2.3e-78 296.6 397 44.1
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 4.0e-78 295.8 421 43.0
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 8.8e-78 294.7 416 43.8
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 2.0e-77 293.5 366 45.1
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 2.6e-77 293.1 404 44.1
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 4.4e-77 292.4 415 41.9
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 4.4e-77 292.4 421 42.3
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 9.8e-77 291.2 390 43.3
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 9.8e-77 291.2 397 42.6
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 1.3e-76 290.8 411 43.1
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 1.7e-76 290.4 391 43.7
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 4.9e-76 288.9 397 44.1
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 6.3e-76 288.5 377 44.8
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 6.3e-76 288.5 377 44.0
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 6.3e-76 288.5 428 41.6
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 8.3e-76 288.1 413 41.6
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 1.4e-75 287.3 353 47.0
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 1.4e-75 287.3 399 43.6
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 1.8e-75 287.0 414 42.3
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 1.8e-75 287.0 390 43.6
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.8e-75 287.0 413 42.1
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 2.4e-75 286.6 418 41.6
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 2.4e-75 286.6 408 42.2
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 5.4e-75 285.4 387 44.4
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 9.2e-75 284.6 396 42.9
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 1.2e-74 284.3 383 43.9
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 1.2e-74 284.3 387 44.2
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 1.2e-74 284.3 407 43.2
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.2e-74 284.3 421 41.6
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 1.2e-74 284.3 379 43.8
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 1.2e-74 284.3 413 41.6
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 1.6e-74 283.9 418 41.9
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 1.6e-74 283.9 421 41.8
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 1.6e-74 283.9 397 41.8
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 2.0e-74 283.5 371 44.5
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 2.0e-74 283.5 399 42.6
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 2.0e-74 283.5 414 42.3
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 5.9e-74 282.0 385 44.4
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 5.9e-74 282.0 385 44.4
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 5.9e-74 282.0 385 44.4
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 5.9e-74 282.0 421 40.9
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 5.9e-74 282.0 377 43.8
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 7.7e-74 281.6 418 42.3
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 1.0e-73 281.2 414 42.5
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.0e-73 281.2 421 40.6
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.0e-73 281.2 421 40.9
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 1.0e-73 281.2 393 42.7
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 2.3e-73 280.0 379 44.3
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 8.6e-73 278.1 401 42.1
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 8.6e-73 278.1 421 42.8
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 8.6e-73 278.1 415 39.8
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 8.6e-73 278.1 391 41.9
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 4.3e-72 275.8 403 42.7
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 4.3e-72 275.8 406 41.4
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 5.6e-72 275.4 408 40.7
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 7.3e-72 275.0 386 42.0
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 9.5e-72 274.6 391 42.5
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 1.2e-71 274.2 408 42.2
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 2.1e-71 273.5 414 39.4
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.8e-71 273.1 403 42.2
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 3.6e-71 272.7 403 42.2
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 3.6e-71 272.7 413 40.2
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 6.1e-71 271.9 394 42.4
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 8.0e-71 271.6 397 41.6
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 8.0e-71 271.6 412 41.0
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 1.4e-70 270.8 413 39.7
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 2.3e-70 270.0 392 42.6
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 2.3e-70 270.0 413 39.7
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 3.0e-70 269.6 407 40.0
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 3.0e-70 269.6 414 39.6
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 4.0e-70 269.2 403 40.2
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 4.0e-70 269.2 410 39.3
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 6.8e-70 268.5 416 38.7
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 1.2e-69 267.7 404 40.1
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 1.5e-69 267.3 416 39.9
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 2.0e-69 266.9 404 39.4
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 2.6e-69 266.5 400 40.2
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 4.4e-69 265.8 404 41.1
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 4.4e-69 265.8 407 41.0
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 5.7e-69 265.4 392 41.6
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 1.3e-68 264.2 403 40.7
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 2.2e-68 263.5 405 40.0
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 1.8e-67 260.4 412 40.0
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 3.2e-67 259.6 390 40.5
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 5.4e-67 258.8 404 40.1
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 5.4e-67 258.8 407 38.6
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 2.7e-66 256.5 429 38.5
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 4.6e-66 255.8 375 41.3
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 2.8e-63 246.5 384 39.6
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 8.0e-63 245.0 398 39.7
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 1.8e-62 243.8 372 40.3
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 2.3e-62 243.4 399 38.6
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 1.2e-61 241.1 399 39.3
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 2.4e-59 233.4 376 37.0
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 3.2e-59 233.0 397 39.0
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 1.2e-58 231.1 382 37.7
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 4.6e-58 229.2 394 37.6
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 5.0e-57 225.7 375 37.3
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 6.2e-55 218.8 363 38.6
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 8.3e-52 208.4 320 39.4
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 1.7e-44 184.1 291 40.5
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 7.1e-43 178.7 442 32.4
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 7.8e-42 175.3 226 44.7
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 1.9e-40 170.6 163 55.2
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 4.9e-36 156.0 505 28.5
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 4.2e-35 152.9 369 31.7
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 1.2e-34 151.4 191 46.1
SHI10509 Sapria himalayana HOM05D003819 ORTHO05D005291 2.7e-34 150.2 237 40.1
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 5.3e-30 136.0 186 42.5
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 6.4e-28 129.0 107 57.0
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 6.4e-28 129.0 107 57.0
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 1.4e-27 127.9 239 35.6
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.3e-25 121.3 94 63.8
RcHm_v2.0_Chr2g0128401 Rosa chinensis HOM05D003819 ORTHO05D005291 1.3e-25 121.3 207 37.7
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 1.6e-18 97.8 89 55.1
unitig_85.g27373 Utricularia gibba HOM05D003819 ORTHO05D005291 1.1e-16 91.7 178 32.6
FvH4_4g05521 Fragaria vesca HOM05D003819 ORTHO05D005291 1.3e-12 78.2 71 54.9
Cc02_g34240 Coffea canephora HOM05D003819 ORTHO05D023588 6.5e-12 75.9 75 53.3
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 1.1e-11 75.1 69 52.2
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 1.1e-11 75.1 69 52.2
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 4.6e-10 69.7 55 58.2
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 4.6e-10 69.7 139 30.2
Haze_22749 Corylus avellana HOM05D003819 ORTHO05D005291 7.9e-10 68.9 60 61.7
HPP92_018919 Vanilla planifolia HOM05D002887 ORTHO05D003159 7.9e-10 68.9 181 33.1
Dinv24544 Davidia involucrata HOM05D003819 ORTHO05D005291 2.3e-09 67.4 43 67.4
Nn1g05663 Nelumbo nucifera HOM05D003819 ORTHO05D019686 3.0e-09 67.0 71 46.5
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 3.9e-09 66.6 50 58.0
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 5.1e-09 66.2 78 42.3
Nn5g28220 Nelumbo nucifera HOM05D003819 ORTHO05D019686 6.7e-09 65.9 52 59.6
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 2.5e-08 63.9 47 68.1
Oeu053232.1 Olea europaea HOM05D003819 ORTHO05D005291 2.1e-07 60.8 106 35.8
HanXRQChr12g0356231 Helianthus annuus HOM05D001818 ORTHO05D001780 8.2e-07 58.9 174 30.5
Aqoxy7G03215 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 4.1e-06 56.6 71 40.8
PGR142G2418 Punica granatum HOM05D002887 ORTHO05D003159 9.0e-06 55.5 130 33.1


User provided reference genes

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