Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 1.8e-91 340.1 319 100.0
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 1.0e-89 334.3 319 86.8
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 1.1e-77 294.3 253 92.1
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 9.7e-77 291.2 318 74.5
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 2.4e-75 286.6 317 74.8
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 4.1e-75 285.8 317 73.5
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 1.0e-73 281.2 317 71.9
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 2.2e-73 280.0 317 71.3
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 1.4e-72 277.3 318 72.0
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 1.9e-72 276.9 254 87.0
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 2.5e-72 276.6 253 87.4
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 9.4e-72 274.6 253 86.6
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 9.4e-72 274.6 317 71.0
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 1.2e-71 274.2 323 71.5
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 1.6e-71 273.9 256 85.9
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.6e-71 273.9 256 85.9
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 3.6e-71 272.7 325 70.5
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 4.7e-71 272.3 256 86.3
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 4.7e-71 272.3 257 86.0
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 7.9e-71 271.6 317 71.9
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 1.0e-70 271.2 317 77.0
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 1.0e-70 271.2 323 70.0
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 3.0e-70 269.6 248 87.9
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 3.9e-70 269.2 252 85.7
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 8.8e-70 268.1 317 68.1
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 1.1e-69 267.7 256 84.4
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.0e-69 266.9 318 69.5
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 2.6e-69 266.5 249 87.1
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.6e-69 266.5 254 85.8
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 3.3e-69 266.2 254 86.2
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.3e-69 266.2 254 86.2
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 4.4e-69 265.8 318 69.2
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 4.4e-69 265.8 249 88.4
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 4.4e-69 265.8 249 88.4
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 4.4e-69 265.8 255 86.3
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 5.7e-69 265.4 250 87.6
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 5.7e-69 265.4 250 86.8
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 9.7e-69 264.6 249 88.0
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.3e-68 264.2 253 85.8
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 1.3e-68 264.2 317 71.3
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.3e-68 264.2 317 70.7
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 1.7e-68 263.8 317 70.7
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 1.7e-68 263.8 317 70.7
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 2.2e-68 263.5 317 70.7
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 3.7e-68 262.7 318 68.6
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 4.8e-68 262.3 317 84.5
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 1.1e-67 261.2 244 89.3
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 1.4e-67 260.8 317 72.6
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 1.8e-67 260.4 317 70.0
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 2.4e-67 260.0 143 82.5
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 2.4e-67 260.0 252 85.3
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 5.3e-67 258.8 143 83.9
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 7.0e-67 258.5 319 68.7
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 9.1e-67 258.1 247 86.2
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 1.2e-66 257.7 244 88.5
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 1.6e-66 257.3 248 84.7
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.0e-66 256.9 256 82.8
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 2.0e-66 256.9 244 88.9
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.6e-66 256.5 256 82.8
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 1.3e-65 254.2 143 81.8
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.3e-65 254.2 250 84.4
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 1.7e-65 253.8 317 72.2
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 2.9e-65 253.1 250 84.8
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 5.0e-65 252.3 317 73.2
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 8.5e-65 251.5 143 82.5
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 1.5e-64 250.8 317 71.9
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 4.2e-64 249.2 143 82.5
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 7.2e-64 248.4 143 80.4
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 7.2e-64 248.4 250 83.6
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 9.4e-64 248.1 143 81.1
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 9.4e-64 248.1 250 83.2
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.2e-63 247.7 252 82.5
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 1.2e-63 247.7 252 82.5
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.2e-63 247.7 252 82.5
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.2e-63 247.7 252 82.5
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 1.2e-63 247.7 252 82.5
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 3.6e-63 246.1 252 81.7
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 1.0e-62 244.6 143 77.6
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 1.0e-62 244.6 143 79.7
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 1.0e-62 244.6 144 78.5
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 1.0e-62 244.6 143 81.8
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 2.3e-62 243.4 143 79.7
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 5.2e-62 242.3 143 79.7
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 8.8e-62 241.5 249 81.9
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.1e-61 241.1 143 79.0
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 2.0e-61 240.4 317 71.6
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 2.6e-61 240.0 144 79.2
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 2.6e-61 240.0 146 76.7
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 4.4e-61 239.2 143 77.6
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 4.4e-61 239.2 143 78.3
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 1.3e-60 237.7 143 76.9
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 2.2e-60 236.9 143 76.2
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 4.8e-60 235.7 143 76.2
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 4.8e-60 235.7 143 75.5
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 4.8e-60 235.7 143 75.5
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 4.8e-60 235.7 143 75.5
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 8.2e-60 235.0 143 76.9
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 3.1e-59 233.0 143 74.1
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 4.1e-59 232.6 143 75.5
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 4.1e-59 232.6 143 75.5
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 2.0e-58 230.3 143 74.8
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 2.0e-58 230.3 143 72.7
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 2.7e-58 229.9 143 73.4
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 3.5e-58 229.6 143 72.7
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 1.5e-56 224.2 143 72.0
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 2.1e-47 193.7 317 65.3
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 4.0e-46 189.5 143 61.5
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 2.8e-44 183.3 143 60.1
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 3.7e-44 183.0 143 57.3
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 2.4e-43 180.3 139 59.0
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 3.1e-43 179.9 143 61.5
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 4.1e-43 179.5 115 69.6
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 7.0e-43 178.7 274 64.6
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 3.5e-42 176.4 144 54.2
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 1.4e-38 164.5 144 57.6
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.5e-37 161.0 106 72.6
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 3.7e-36 156.4 318 53.5
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 5.4e-35 152.5 256 64.8
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.9e-32 144.1 109 60.6
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 2.2e-28 130.6 114 59.6
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 6.4e-28 129.0 109 52.3
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.1e-27 128.3 131 48.1
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 9.8e-21 105.1 143 40.6
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.0e-17 93.6 143 38.5
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.6e-15 87.8 143 37.8
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 3.6e-15 86.7 206 59.7
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 1.5e-13 81.3 120 43.3
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 3.2e-11 73.6 118 39.0
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 3.0e-09 67.0 35 82.9
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 5.1e-09 66.2 93 38.7
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 3.3e-08 63.5 35 80.0
BcaB01g04544 Brassica carinata HOM05D000347 ORTHO05D001997 4.0e-06 56.6 134 28.4


User provided reference genes

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