Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 6.3e-64 247.7 164 100.0
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 3.5e-62 241.9 164 86.6
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 2.5e-52 209.1 166 86.7
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 6.4e-40 167.9 164 65.2
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 8.3e-40 167.5 164 65.2
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 4.1e-39 165.2 164 64.6
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 9.2e-39 164.1 166 63.3
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 1.6e-38 163.3 165 64.2
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 4.6e-38 161.8 155 64.5
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 5.0e-37 158.3 164 62.8
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 8.6e-37 157.5 162 63.6
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 1.1e-36 157.1 160 60.0
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 4.3e-36 155.2 165 61.8
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 5.6e-36 154.8 162 63.6
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 9.5e-36 154.1 162 63.0
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 3.6e-35 152.1 162 61.1
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 4.7e-35 151.8 164 62.2
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 6.2e-35 151.4 165 62.4
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 8.0e-35 151.0 158 59.5
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 2.3e-34 149.4 164 62.2
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 3.1e-34 149.1 164 62.2
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 3.1e-34 149.1 162 62.3
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 4.0e-34 148.7 162 62.3
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 4.0e-34 148.7 164 59.8
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 6.8e-34 147.9 164 61.6
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 6.8e-34 147.9 164 61.6
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 8.9e-34 147.5 162 61.7
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 1.5e-33 146.7 165 61.8
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 2.0e-33 146.4 196 50.0
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 3.4e-33 145.6 164 61.0
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 3.4e-33 145.6 141 66.0
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 1.1e-31 140.6 163 59.5
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 1.9e-31 139.8 162 61.1
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 4.1e-31 138.7 162 56.8
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 9.2e-31 137.5 164 57.9
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 9.2e-31 137.5 146 61.6
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 4.6e-30 135.2 164 56.7
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 4.6e-30 135.2 168 57.7
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 7.8e-30 134.4 118 69.5
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 1.3e-29 133.7 161 57.8
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 1.3e-29 133.7 165 57.6
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 1.3e-29 133.7 165 57.6
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 1.9e-28 129.8 160 53.8
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 2.5e-28 129.4 164 56.7
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 3.3e-28 129.0 164 56.1
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 3.3e-28 129.0 166 58.4
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 5.6e-28 128.3 150 56.0
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 5.6e-28 128.3 164 56.1
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 1.2e-27 127.1 156 53.8
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 1.2e-27 127.1 164 54.9
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 2.1e-27 126.3 162 54.3
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 4.7e-27 125.2 158 58.2
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 4.7e-27 125.2 160 52.5
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 8.1e-27 124.4 161 56.5
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 1.1e-26 124.0 140 58.6
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 1.4e-26 123.6 153 56.9
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 2.3e-26 122.9 167 54.5
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 3.1e-26 122.5 165 53.3
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 5.2e-26 121.7 166 54.8
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 5.2e-26 121.7 163 54.0
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 5.2e-26 121.7 163 54.0
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 5.2e-26 121.7 167 52.7
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 5.2e-26 121.7 162 53.1
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 2.0e-25 119.8 168 53.0
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 2.0e-25 119.8 167 54.5
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 2.0e-25 119.8 157 55.4
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 2.0e-25 119.8 168 51.8
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 2.0e-25 119.8 162 53.1
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 2.6e-25 119.4 165 52.7
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 2.6e-25 119.4 149 53.7
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 5.8e-25 118.2 167 52.7
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 7.5e-25 117.9 162 51.2
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 7.5e-25 117.9 162 52.5
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 7.5e-25 117.9 147 52.4
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 9.9e-25 117.5 162 51.9
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 1.3e-24 117.1 134 57.5
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 1.3e-24 117.1 139 58.3
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 1.3e-24 117.1 145 61.4
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.3e-24 117.1 142 54.2
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.3e-24 117.1 142 54.2
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 1.7e-24 116.7 165 52.7
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 1.7e-24 116.7 75 84.0
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 1.7e-24 116.7 165 51.5
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 2.9e-24 115.9 167 52.7
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 2.9e-24 115.9 167 52.7
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 6.4e-24 114.8 163 50.9
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 8.3e-24 114.4 154 52.6
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 8.3e-24 114.4 147 54.4
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 1.1e-23 114.0 139 56.8
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 1.1e-23 114.0 149 55.7
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 1.4e-23 113.6 142 64.8
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 2.4e-23 112.8 75 81.3
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 4.1e-23 112.1 159 53.5
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 4.1e-23 112.1 159 53.5
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 4.1e-23 112.1 159 53.5
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 1.2e-22 110.5 150 54.0
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 1.2e-22 110.5 146 51.4
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 2.7e-22 109.4 142 54.2
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 3.5e-22 109.0 126 56.3
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 6.0e-22 108.2 141 54.6
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 7.8e-22 107.8 166 54.2
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 1.3e-21 107.1 128 54.7
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 1.7e-21 106.7 161 50.9
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 5.1e-21 105.1 76 77.6
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 6.6e-21 104.8 134 56.0
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 1.9e-20 103.2 74 77.0
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 2.5e-20 102.8 77 76.6
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 9.5e-20 100.9 70 81.4
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 2.1e-19 99.8 155 62.6
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 2.8e-19 99.4 139 51.8
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 3.6e-19 99.0 166 46.4
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.1e-18 97.4 75 73.3
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.1e-18 97.4 75 73.3
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 1.1e-18 97.4 67 77.6
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 1.4e-18 97.1 110 62.7
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 2.4e-18 96.3 144 49.3
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 3.1e-18 95.9 142 50.7
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 2.0e-17 93.2 77 70.1
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 3.2e-15 85.9 157 46.5
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 6.0e-14 81.6 59 79.7
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 1.3e-13 80.5 127 49.6
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 7.3e-12 74.7 70 64.3
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 7.3e-12 74.7 70 67.1
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 2.8e-11 72.8 67 67.2
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 3.6e-11 72.4 67 68.7
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 6.2e-11 71.6 134 44.8
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 1.2e-09 67.4 70 65.7
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 6.4e-08 61.6 46 76.1


User provided reference genes

Program Settings