Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000555 Carpinus fangiana HOM05D007006 ORTHO05D008925 2.9e-111 405.2 203 100.0
Haze_06320 Corylus avellana HOM05D007006 ORTHO05D008925 1.9e-65 253.1 196 73.0
CiPaw.10G055000 Carya illinoinensis HOM05D007006 ORTHO05D008925 5.4e-57 224.9 204 65.2
MD10G1285600 Malus domestica HOM05D007006 ORTHO05D008925 2.8e-53 212.6 183 65.0
Prupe.4G056000 Prunus persica HOM05D007006 ORTHO05D008925 1.4e-52 210.3 183 64.5
CANSAT35G1771 Cannabis sativa HOM05D007006 ORTHO05D008925 4.0e-52 208.8 204 60.8
Thecc.06G177200 Theobroma cacao HOM05D007006 ORTHO05D008925 1.5e-51 206.8 206 59.7
Gohir.D10G029800 Gossypium hirsutum HOM05D007006 ORTHO05D008925 2.0e-51 206.5 203 60.1
Gorai.011G031700 Gossypium raimondii HOM05D007006 ORTHO05D008925 2.0e-51 206.5 203 60.1
CsaV3_1G012640 Cucumis sativus L. HOM05D007006 ORTHO05D008925 7.6e-51 204.5 205 60.5
Gohir.A10G029300 Gossypium hirsutum HOM05D007006 ORTHO05D008925 2.2e-50 203.0 203 59.6
Duzib160G0118 Durio zibethinus HOM05D007006 ORTHO05D008925 8.4e-50 201.1 201 58.7
Atru.chr10.1745 Acer truncatum HOM05D007006 ORTHO05D008925 1.9e-49 199.9 174 64.9
Phvul.006G179400 Phaseolus vulgaris HOM05D007006 ORTHO05D008925 2.4e-49 199.5 182 62.6
Sed0005765 Sechium edule HOM05D007006 ORTHO05D008925 3.2e-49 199.1 203 59.1
COL.COLO4_31384 Corchorus olitorius HOM05D007006 ORTHO05D008976 4.2e-49 198.7 174 64.9
THA.LOC104798412 Tarenaya hassleriana HOM05D007006 ORTHO05D008925 4.2e-49 198.7 174 63.2
RcHm_v2.0_Chr5g0009821 Rosa chinensis HOM05D007006 ORTHO05D008925 5.4e-49 198.4 181 62.4
Sp7g15560 Schrenkiella parvula HOM05D007006 ORTHO05D008925 5.4e-49 198.4 195 58.5
arahy.Tifrunner.gnm1.ann1.PE4VQR Arachis hypogaea HOM05D000109 ORTHO05D000965 7.1e-49 198.0 196 60.2
Manes.16G034601 Manihot esculenta HOM05D007006 ORTHO05D008925 7.1e-49 198.0 174 66.1
Glyma.15G079600 Glycine max HOM05D007006 ORTHO05D008925 1.2e-48 197.2 189 62.4
CARHR225300 Cardamine hirsuta HOM05D007006 ORTHO05D008925 2.1e-48 196.4 174 63.2
Eucgr.E03165 Eucalyptus grandis HOM05D007006 ORTHO05D008925 2.7e-48 196.1 198 60.1
Potri.011G062200 Populus trichocarpa HOM05D007006 ORTHO05D008925 3.5e-48 195.7 203 59.1
TPR.G31857 Trifolium pratense HOM05D007006 ORTHO05D008925 4.6e-48 195.3 178 62.4
VMungo0540G0068 Vigna mungo HOM05D007006 ORTHO05D008925 4.6e-48 195.3 182 61.5
BraA01t00989Z Brassica rapa HOM05D007006 ORTHO05D008925 6.0e-48 194.9 214 56.1
Glyma.13G233500 Glycine max HOM05D007006 ORTHO05D008925 7.9e-48 194.5 177 63.3
Nn1g04307 Nelumbo nucifera HOM05D007006 ORTHO05D008925 1.7e-47 193.4 171 63.2
Carub.0007s2277 Capsella rubella HOM05D007006 ORTHO05D008925 2.3e-47 193.0 211 55.9
Migut.M01077 Erythranthe guttata HOM05D007006 ORTHO05D008925 2.3e-47 193.0 174 64.4
TWI63G0680 Tripterygium wilfordii HOM05D007006 ORTHO05D008925 3.0e-47 192.6 201 58.7
TAR626G0127 Trochodendron aralioides HOM05D007006 ORTHO05D008925 6.6e-47 191.4 174 63.8
Lj6g0023400 Lotus japonicus HOM05D007006 ORTHO05D008925 8.7e-47 191.0 178 61.8
Rhsim02G0152900 Rhododendron simsii HOM05D007006 ORTHO05D008925 8.7e-47 191.0 188 58.5
GSVIVG01021151001 Vitis vinifera HOM05D007006 ORTHO05D008925 8.7e-47 191.0 174 62.1
MELO3C002631.2 Cucumis melo HOM05D007006 ORTHO05D008925 1.1e-46 190.7 208 58.2
PSO210G2152 Papaver somniferum HOM05D007006 ORTHO05D008925 1.1e-46 190.7 199 56.3
AT4G18460 Arabidopsis thaliana HOM05D007006 ORTHO05D008925 1.9e-46 189.9 171 62.6
MSTRG.7381 Avicennia marina HOM05D007006 ORTHO05D008925 1.9e-46 189.9 170 63.5
FAN21G1832 Fragaria x ananassa HOM05D007006 ORTHO05D008925 1.9e-46 189.9 171 64.3
Sabra11G0042600 Salix brachista HOM05D007006 ORTHO05D008925 1.9e-46 189.9 216 56.9
Sabra11G0044100 Salix brachista HOM05D007006 ORTHO05D008925 1.9e-46 189.9 216 56.9
Oeu001091.1 Olea europaea HOM05D007006 ORTHO05D008925 2.5e-46 189.5 170 62.9
Psat1g148320 Pisum sativum HOM05D007006 ORTHO05D008925 3.3e-46 189.1 186 59.7
Thhalv10026439m.g Eutrema salsugineum HOM05D007006 ORTHO05D008925 4.3e-46 188.7 171 62.0
Actinidia07621 Actinidia chinensis HOM05D007006 ORTHO05D008925 5.6e-46 188.3 174 60.3
Dinv17375 Davidia involucrata HOM05D007006 ORTHO05D008925 5.6e-46 188.3 174 64.4
AL7G35820 Arabidopsis lyrata HOM05D007006 ORTHO05D008925 9.6e-46 187.6 171 61.4
BcaC09g51505 Brassica carinata HOM05D007006 ORTHO05D008925 9.6e-46 187.6 196 57.7
BolC1t01215H Brassica oleracea HOM05D007006 ORTHO05D008925 9.6e-46 187.6 196 57.7
Ca_11669_v3 Cicer arietinum L. HOM05D007006 ORTHO05D008925 1.3e-45 187.2 175 61.7
Aa31LG6G1200 Aethionema arabicum HOM05D007006 ORTHO05D008925 1.6e-45 186.8 201 56.2
ATR0602G073 Amborella trichopoda HOM05D007006 ORTHO05D008925 1.6e-45 186.8 170 61.8
SalBow8G1160 Salvia bowleyana HOM05D007006 ORTHO05D008925 1.6e-45 186.8 178 61.2
EL10Ac8g20473 Beta vulgaris HOM05D007006 ORTHO05D008925 4.8e-45 185.3 102 83.3
CSS0027125 Camellia sinensis var. sinensis HOM05D007006 ORTHO05D008925 8.1e-45 184.5 174 59.2
Sopen02g022230 Solanum pennellii HOM05D007006 ORTHO05D008925 1.8e-44 183.3 170 61.8
PGSC0003DMG400010717 Solanum tuberosum HOM05D007006 ORTHO05D008925 1.8e-44 183.3 170 61.8
Solyc02g077310.4 Solanum lycopersicum HOM05D007006 ORTHO05D008925 2.4e-44 183.0 170 61.8
BcaNung05874 Brassica carinata HOM05D007006 ORTHO05D008925 6.9e-44 181.4 214 53.3
Nitab4.5_0000376g0100 Nicotiana tabacum HOM05D007006 ORTHO05D008925 9.0e-44 181.0 170 59.4
Os01g0242500 Oryza sativa ssp. japonica HOM05D007006 ORTHO05D008925 1.5e-43 180.3 167 61.1
SEGI_08558 Sequoiadendron giganteum HOM05D007006 ORTHO05D008925 1.5e-43 180.3 100 83.0
CAN.G79.66 Capsicum annuum HOM05D007006 ORTHO05D008925 2.0e-43 179.9 170 58.8
FvH4_3g08260 Fragaria vesca HOM05D007006 ORTHO05D008925 7.6e-43 177.9 183 60.1
Pp3c2_4790 Physcomitrium patens HOM05D007006 ORTHO05D008925 7.6e-43 177.9 104 80.8
Hma1.2p1_0155F.1_g068540 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 9.9e-43 177.6 173 60.1
Zm00001eb122370 Zea mays HOM05D007006 ORTHO05D008925 1.3e-42 177.2 167 59.9
ECA248G3223 Erigeron canadensis HOM05D007006 ORTHO05D008925 2.9e-42 176.0 167 60.5
FAN11G3635 Fragaria x ananassa HOM05D007006 ORTHO05D008925 2.9e-42 176.0 181 60.2
FAN16G3644 Fragaria x ananassa HOM05D007006 ORTHO05D008925 2.9e-42 176.0 181 60.2
HanXRQChr01g0008471 Helianthus annuus HOM05D007006 ORTHO05D008925 3.8e-42 175.6 172 58.1
Medtr2g036040 Medicago truncatula HOM05D007006 ORTHO05D008925 3.8e-42 175.6 189 57.1
Nitab4.5_0011727g0040 Nicotiana tabacum HOM05D007006 ORTHO05D008925 6.4e-42 174.9 178 57.3
CDE02G4743 Ceratophyllum demersum HOM05D007006 ORTHO05D008925 5.5e-41 171.8 167 58.7
DCAR_004029 Daucus carota HOM05D007006 ORTHO05D008925 7.9e-40 167.9 102 76.5
ClCG03G007950 Citrullus lanatus HOM05D007006 ORTHO05D008925 1.0e-39 167.5 257 45.9
HPP92_002943 Vanilla planifolia HOM05D007006 ORTHO05D008925 3.9e-39 165.6 167 58.1
Sc05g0007280 Simmondsia chinensis HOM05D007006 ORTHO05D008925 1.1e-38 164.1 189 56.1
CBR_g12914 Chara braunii HOM05D007006 ORTHO05D008925 3.3e-38 162.5 167 54.5
PGR042G2307 Punica granatum HOM05D007006 ORTHO05D008925 9.6e-38 161.0 133 64.7
SMO356G0615 Selaginella moellendorffii HOM05D007006 ORTHO05D008925 9.6e-38 161.0 172 52.3
SGA_v2.0_scaffold309G48130 Striga asiatica HOM05D007006 ORTHO05D008925 2.1e-37 159.8 187 54.5
CBR_g28086 Chara braunii HOM05D007006 ORTHO05D008925 6.2e-37 158.3 167 53.3
Cc02_g14310 Coffea canephora HOM05D007006 ORTHO05D008925 6.2e-37 158.3 157 58.0
Peaxi162Scf00875g00318 Petunia axillaris HOM05D007006 ORTHO05D008925 1.4e-36 157.1 92 79.3
Lj1A1197T80 Lonicera japonica HOM05D007006 ORTHO05D008925 1.8e-36 156.8 174 54.6
A01p10430 Brassica napus HOM05D007006 ORTHO05D008925 3.1e-36 156.0 215 49.3
Mapoly0096s0066 Marchantia polymorpha HOM05D007006 ORTHO05D008925 6.9e-36 154.8 169 52.7
Cpa.g.sc7.31 Carica papaya HOM05D007006 ORTHO05D008925 2.9e-34 149.4 155 57.4
Eucgr.E02654 Eucalyptus grandis HOM05D007006 ORTHO05D008925 2.9e-34 149.4 150 60.0
AUR62014917 Chenopodium quinoa HOM05D007006 ORTHO05D008925 3.8e-34 149.1 81 84.0
C01p12410 Brassica napus HOM05D007006 ORTHO05D008925 4.9e-34 148.7 216 48.1
Ciclev10016962m.g Citrus clementina HOM05D007006 ORTHO05D008925 4.9e-34 148.7 147 61.2
AUR62031124 Chenopodium quinoa HOM05D007006 ORTHO05D008925 6.5e-34 148.3 169 53.8
PSO832G1055 Papaver somniferum HOM05D007006 ORTHO05D008925 6.5e-34 148.3 81 84.0
SGA_v2.0_scaffold309G48148 Striga asiatica HOM05D007006 ORTHO05D008925 1.4e-33 147.1 195 49.7
MBI06_g25712_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 9.3e-33 144.4 81 84.0
Hund21193 Selenicereus undatus HOM05D007006 ORTHO05D008925 2.1e-32 143.3 160 56.2
Hma1.2p1_0155F.1_g068550 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 2.7e-32 142.9 174 51.7
Lalb_Chr20g0121401 Lupinus albus HOM05D007006 ORTHO05D008925 3.3e-30 136.0 82 75.6
Lsat_1_v5_gn_1_120360 Lactuca sativa HOM05D007006 ORTHO05D008925 9.0e-28 127.9 80 75.0
Cre12.g542000 Chlamydomonas reinhardtii HOM05D007006 ORTHO05D008925 3.7e-21 105.9 171 40.4
RcHm_v2.0_Chr5g0007981 Rosa chinensis HOM05D007006 ORTHO05D008925 8.2e-21 104.8 59 84.7
CBR_g41520 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-20 104.4 72 65.3
MCO06G160 Micromonas commoda HOM05D007006 ORTHO05D008925 5.3e-20 102.1 186 39.8
SGA_v2.0_scaffold309G48132 Striga asiatica HOM05D007006 ORTHO05D008925 3.4e-19 99.4 113 50.4
PRCOL_00003508 Prasinoderma coloniale HOM05D007006 ORTHO05D008925 3.8e-18 95.9 169 39.6
Haze_27122 Corylus avellana HOM05D007006 ORTHO05D008925 3.6e-16 89.4 104 39.4


User provided reference genes

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