Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 1.9e-140 502.7 284 100.0
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 4.5e-118 428.3 278 83.1
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 4.0e-90 335.5 290 66.6
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 9.8e-81 304.3 231 68.8
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 2.8e-75 286.2 243 61.3
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 6.4e-72 275.0 293 55.6
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 1.3e-69 267.3 291 53.6
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 1.4e-66 257.3 277 54.2
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 8.4e-64 248.1 287 51.6
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 8.4e-64 248.1 263 51.0
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 8.4e-64 248.1 265 54.0
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 1.4e-63 247.3 278 51.8
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.5e-62 242.7 281 51.2
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 1.0e-61 241.1 286 51.0
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 3.0e-61 239.6 272 51.8
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 1.1e-60 237.7 290 49.7
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 1.9e-60 236.9 291 50.2
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 5.6e-60 235.3 286 48.6
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 2.4e-58 229.9 216 56.9
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 2.4e-58 229.9 295 47.1
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 1.2e-57 227.6 285 45.3
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 2.6e-57 226.5 300 47.0
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 2.6e-57 226.5 274 49.6
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 1.7e-56 223.8 269 47.2
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 2.2e-56 223.4 286 46.5
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 3.8e-56 222.6 282 47.2
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 3.8e-56 222.6 286 47.6
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 8.4e-56 221.5 252 50.4
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 9.3e-55 218.0 283 46.3
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.0e-53 214.5 248 49.2
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 6.6e-53 211.8 270 48.5
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 7.4e-52 208.4 286 45.1
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 3.1e-50 203.0 278 46.0
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 1.2e-49 201.1 276 44.9
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 4.5e-49 199.1 279 42.7
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 4.5e-49 199.1 279 42.7
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 7.6e-49 198.4 287 40.4
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 2.2e-48 196.8 284 44.7
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 8.4e-48 194.9 266 43.6
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 3.2e-47 193.0 293 44.0
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 3.2e-47 193.0 252 44.8
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 7.1e-47 191.8 244 49.2
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 1.2e-46 191.0 290 40.7
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 6.0e-46 188.7 283 41.3
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 1.0e-45 188.0 227 48.0
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 3.9e-45 186.0 285 41.8
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 8.7e-45 184.9 173 54.9
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 3.3e-44 183.0 273 42.1
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 9.6e-44 181.4 282 42.9
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 1.6e-43 180.6 289 39.8
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 2.1e-43 180.3 285 40.7
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 2.1e-43 180.3 252 41.7
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 9.0e-42 174.9 251 41.4
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 9.0e-42 174.9 274 39.1
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 1.5e-41 174.1 229 44.5
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 1.5e-41 174.1 251 41.8
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 4.5e-41 172.6 252 40.9
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 5.8e-41 172.2 251 41.8
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 1.0e-40 171.4 272 42.3
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 3.2e-39 166.4 183 48.6
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 9.3e-39 164.9 183 48.6
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 9.3e-39 164.9 179 52.5
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 9.3e-39 164.9 276 38.0
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 2.1e-38 163.7 289 38.1
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 2.7e-38 163.3 190 46.8
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 2.7e-38 163.3 284 43.3
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 1.3e-37 161.0 234 41.5
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 2.3e-37 160.2 256 38.7
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 1.1e-36 157.9 282 36.5
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 2.8e-35 153.3 276 37.3
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 1.4e-34 151.0 277 43.0
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.1e-34 149.8 204 45.1
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 5.0e-32 142.5 226 38.5
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 1.4e-31 141.0 232 39.2
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 7.2e-31 138.7 230 39.1
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 7.2e-31 138.7 232 38.8
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 1.6e-30 137.5 287 34.8
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 1.3e-29 134.4 215 39.1
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 2.3e-29 133.7 274 34.7
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 5.1e-29 132.5 289 32.5
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 6.7e-29 132.1 263 35.0
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 8.7e-29 131.7 244 35.7
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 8.7e-29 131.7 244 35.7
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 2.5e-28 130.2 252 36.5
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 7.4e-28 128.6 242 34.7
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 3.1e-26 123.2 230 37.8
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 1.5e-25 120.9 263 34.2
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 2.0e-25 120.6 256 33.6
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 1.0e-24 118.2 172 43.6
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.4e-23 114.4 187 42.2
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 3.9e-21 106.3 274 31.4
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 8.8e-21 105.1 94 56.4
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 1.4e-18 97.8 117 43.6
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 1.1e-15 88.2 237 29.5
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 4.2e-15 86.3 327 25.4
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 6.1e-14 82.4 155 37.4
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 2.2e-11 73.9 134 35.8
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 4.8e-11 72.8 304 25.0
HPP92_005282 Vanilla planifolia HOM05D007447 ORTHO05D009372 4.1e-10 69.7 277 27.1
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 7.0e-10 68.9 170 28.8
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.1e-07 61.6 53 58.5
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.1e-07 61.6 53 58.5
SEGI_19030 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 1.5e-07 61.2 63 46.0
Gohir.A02G158500 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.2e-07 60.1 53 56.6


User provided reference genes

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