Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 6.5e-87 323.9 153 100.0
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 3.8e-79 298.1 153 92.2
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 7.2e-70 267.3 152 79.6
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 2.1e-69 265.8 152 81.6
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 8.8e-68 260.4 149 79.9
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 2.6e-67 258.8 150 79.3
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 9.7e-67 256.9 150 78.0
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 3.7e-66 255.0 151 77.5
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 4.8e-66 254.6 151 74.8
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 6.3e-66 254.2 150 78.0
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 4.1e-65 251.5 152 73.0
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 7.0e-65 250.8 152 77.6
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 7.7e-64 247.3 148 75.0
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 1.3e-63 246.5 152 77.0
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 2.9e-63 245.4 150 76.0
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 8.5e-63 243.8 150 72.7
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 5.5e-62 241.1 153 72.5
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 2.7e-61 238.8 150 74.0
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 4.7e-61 238.0 150 74.7
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 1.0e-60 236.9 150 74.0
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 1.8e-60 236.1 150 73.3
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 1.8e-60 236.1 149 73.8
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 1.8e-60 236.1 149 73.2
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 2.3e-60 235.7 151 72.2
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 3.0e-60 235.3 150 68.7
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 3.0e-60 235.3 148 70.3
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 4.0e-60 235.0 150 73.3
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 1.1e-59 233.4 150 72.7
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 3.3e-59 231.9 151 69.5
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 5.7e-59 231.1 150 72.0
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 1.7e-58 229.6 147 72.8
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 8.2e-58 227.3 148 70.3
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 1.4e-57 226.5 150 71.3
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 1.4e-57 226.5 150 71.3
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 1.4e-57 226.5 148 70.9
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 4.1e-57 224.9 144 73.6
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 5.3e-57 224.6 150 70.7
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 2.0e-56 222.6 147 68.0
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 2.7e-56 222.2 149 65.1
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 1.3e-55 219.9 149 69.1
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 1.3e-55 219.9 153 68.0
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 1.1e-54 216.9 148 68.2
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 1.5e-54 216.5 147 71.4
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 7.2e-54 214.2 148 65.5
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 9.4e-54 213.8 153 66.7
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 9.4e-54 213.8 153 65.4
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 2.7e-53 212.2 149 68.5
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 3.6e-53 211.8 118 81.4
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 2.3e-52 209.1 151 62.3
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 4.0e-52 208.4 152 65.1
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 4.0e-52 208.4 152 64.5
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 4.0e-52 208.4 152 65.1
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 6.8e-52 207.6 152 64.5
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 6.8e-52 207.6 152 65.1
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 1.2e-51 206.8 148 62.2
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 2.6e-51 205.7 149 66.4
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 5.7e-51 204.5 150 61.3
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 7.5e-51 204.1 152 62.5
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 2.8e-50 202.2 147 63.3
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 2.8e-50 202.2 147 63.3
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 3.7e-50 201.8 148 62.2
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 4.8e-50 201.4 151 62.3
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 1.4e-49 199.9 148 61.5
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 7.7e-48 194.1 151 61.6
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 2.9e-47 192.2 147 62.6
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 2.9e-47 192.2 147 57.1
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 6.5e-47 191.0 152 58.6
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.9e-46 189.5 111 75.7
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 3.2e-46 188.7 151 57.6
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 3.2e-46 188.7 149 59.7
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 4.2e-46 188.3 150 56.7
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 4.2e-46 188.3 151 61.6
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 9.4e-46 187.2 126 70.6
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 2.7e-45 185.7 151 56.3
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 6.1e-45 184.5 152 57.2
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 2.0e-40 169.5 154 55.8
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 7.7e-40 167.5 121 64.5
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 6.6e-39 164.5 123 65.0
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 3.7e-34 148.7 99 72.7
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 2.0e-27 126.3 97 70.1
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 2.6e-27 125.9 140 42.9
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 6.4e-18 94.7 151 36.4
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 9.2e-17 90.9 125 37.6
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 8.6e-15 84.3 54 72.2
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 3.6e-13 79.0 63 57.1
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 5.2e-12 75.1 83 47.0
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 7.8e-08 61.2 84 35.7


User provided reference genes

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