Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 6.2e-166 587.4 303 100.0
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 2.4e-141 505.8 302 86.4
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 6.5e-139 497.7 303 84.8
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 1.1e-135 486.9 291 84.9
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 4.8e-134 481.5 305 82.3
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.4e-133 479.2 291 82.8
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 6.9e-133 477.6 303 84.5
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 2.6e-132 475.7 301 81.1
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.0e-131 473.8 289 83.0
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 5.0e-131 471.5 283 81.6
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 1.1e-130 470.3 299 82.3
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 1.1e-130 470.3 280 84.3
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.1e-130 470.3 297 81.5
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.1e-130 470.3 295 81.4
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 1.9e-130 469.5 296 81.4
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 2.5e-130 469.2 303 79.5
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 5.5e-130 468.0 281 82.9
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 7.2e-130 467.6 305 80.3
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 7.2e-130 467.6 294 79.6
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 1.6e-129 466.5 284 82.4
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.7e-129 465.7 287 81.2
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 3.6e-129 465.3 306 77.5
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 3.6e-129 465.3 308 79.5
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 7.9e-129 464.2 283 82.3
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.0e-128 463.8 293 80.2
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.4e-128 463.4 281 80.8
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 1.4e-128 463.4 286 81.8
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 3.0e-128 462.2 297 79.1
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 3.9e-128 461.8 281 83.6
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 5.1e-128 461.5 293 80.5
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 5.1e-128 461.5 326 74.2
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 5.1e-128 461.5 291 80.1
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 8.8e-128 460.7 281 81.5
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.1e-127 460.3 296 79.4
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.5e-127 459.9 285 80.7
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.5e-127 459.9 285 80.7
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.5e-127 459.9 285 80.7
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 2.0e-127 459.5 303 77.9
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.0e-127 459.5 298 77.5
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 2.0e-127 459.5 289 79.9
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.0e-127 459.5 303 76.9
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 2.6e-127 459.1 290 81.4
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.6e-127 459.1 282 82.3
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 3.3e-127 458.8 290 79.3
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 3.3e-127 458.8 285 82.1
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 3.3e-127 458.8 289 79.6
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 4.4e-127 458.4 304 78.9
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 5.7e-127 458.0 287 80.1
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 5.7e-127 458.0 291 80.4
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 5.7e-127 458.0 295 79.7
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 7.4e-127 457.6 291 80.1
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 9.7e-127 457.2 285 80.4
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.3e-126 456.8 301 76.4
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.3e-126 456.8 301 77.4
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.7e-126 456.4 295 79.0
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 1.7e-126 456.4 291 78.7
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 1.7e-126 456.4 281 81.5
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 1.7e-126 456.4 304 78.0
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 1.7e-126 456.4 295 79.7
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.7e-126 456.4 303 79.2
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 2.2e-126 456.1 287 79.8
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 2.2e-126 456.1 288 79.2
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 2.2e-126 456.1 304 78.0
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 2.2e-126 456.1 291 79.0
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 2.8e-126 455.7 303 78.2
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.7e-126 455.3 286 80.1
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 4.8e-126 454.9 289 78.9
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 4.8e-126 454.9 281 81.5
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 6.3e-126 454.5 308 77.6
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 6.3e-126 454.5 287 79.8
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 8.2e-126 454.1 293 78.8
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.4e-125 453.4 294 78.2
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.8e-125 453.0 291 78.7
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.8e-125 453.0 281 80.8
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.8e-125 453.0 309 76.1
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 2.4e-125 452.6 296 77.7
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 3.1e-125 452.2 284 80.3
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 4.1e-125 451.8 287 78.7
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 4.1e-125 451.8 292 79.8
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 6.9e-125 451.1 281 80.8
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 6.9e-125 451.1 295 78.0
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 9.1e-125 450.7 281 80.8
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 9.1e-125 450.7 298 77.9
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 1.2e-124 450.3 281 79.7
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 2.0e-124 449.5 291 78.4
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.0e-124 449.5 281 80.1
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 2.6e-124 449.1 304 78.9
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 3.4e-124 448.7 298 77.2
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 4.5e-124 448.4 299 74.9
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 5.9e-124 448.0 284 79.6
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.9e-124 448.0 285 79.3
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 5.9e-124 448.0 298 77.2
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.3e-123 446.8 285 79.3
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 1.3e-123 446.8 296 77.0
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 2.9e-123 445.7 291 75.3
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 3.8e-123 445.3 291 77.7
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 3.8e-123 445.3 289 78.2
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 3.8e-123 445.3 300 77.0
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 3.8e-123 445.3 291 78.0
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.0e-123 444.9 297 76.4
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 1.1e-122 443.7 304 77.6
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.4e-122 443.4 289 78.2
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.9e-122 443.0 272 82.0
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 2.5e-122 442.6 279 78.9
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 4.2e-122 441.8 268 82.8
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 1.6e-121 439.9 291 76.6
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 3.6e-121 438.7 283 78.8
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.0e-120 437.2 293 77.1
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.4e-120 436.8 284 78.9
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 7.4e-119 431.0 288 77.4
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 1.7e-118 429.9 309 73.5
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 2.8e-118 429.1 262 83.2
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 8.2e-118 427.6 274 79.2
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 2.4e-117 426.0 296 73.6
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.2e-116 423.7 291 75.3
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 1.2e-116 423.7 301 73.1
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 4.5e-116 421.8 284 77.8
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 3.8e-115 418.7 301 73.1
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 8.5e-115 417.5 289 74.0
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 4.7e-113 411.8 330 67.3
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.0e-112 410.6 283 75.3
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 5.7e-111 404.8 363 63.4
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 2.7e-108 396.0 221 86.9
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.9e-107 392.5 256 77.7
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.5e-106 389.4 221 86.9
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.2e-105 387.1 278 71.6
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 4.7e-105 385.2 250 74.8
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.0e-104 384.0 288 66.7
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 1.8e-104 383.3 259 76.4
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 3.0e-104 382.5 273 69.6
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.3e-102 374.8 218 85.3
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.3e-102 374.8 218 85.3
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 8.3e-102 374.4 251 73.7
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 5.4e-101 371.7 200 92.0
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.8e-96 354.8 309 64.4
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 1.2e-95 354.0 253 68.4
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 9.5e-90 334.3 235 72.8
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 5.2e-88 328.6 215 78.6
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.3e-86 323.9 182 86.8
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 2.9e-86 322.8 182 87.9
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 2.2e-78 296.6 208 73.6
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 2.4e-77 293.1 174 83.3
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 7.3e-74 281.6 190 76.8
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 3.4e-71 272.7 221 70.1
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 5.4e-69 265.4 152 85.5
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.1e-64 251.1 194 66.5
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.9e-61 240.4 143 83.9
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 3.8e-54 216.1 208 59.6
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 2.5e-50 203.4 155 69.7
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 5.6e-50 202.2 136 77.9
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 8.4e-46 188.3 117 75.2
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.4e-45 187.6 245 46.5
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 3.7e-41 172.9 177 56.5
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 1.8e-40 170.6 103 77.7
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 8.7e-35 151.8 94 75.5
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 1.5e-34 151.0 86 82.6
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 7.1e-29 132.1 82 78.0
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 7.1e-29 132.1 305 32.5
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 1.4e-24 117.9 170 42.9
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 2.4e-24 117.1 66 86.4
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 2.4e-24 117.1 66 86.4
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 4.1e-24 116.3 191 42.4
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 2.2e-22 110.5 86 67.4
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 7.7e-15 85.5 158 38.0
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-13 80.9 85 51.8
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.5e-13 79.3 63 68.3
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.5e-13 79.3 63 68.3
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 7.2e-13 79.0 53 69.8
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 3.6e-12 76.6 63 65.1
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 1.0e-11 75.1 79 50.6
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 2.3e-11 73.9 92 47.8
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.8e-09 67.0 110 39.1
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 4.8e-09 66.2 103 39.8
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 5.3e-08 62.8 80 52.5
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 9.1e-08 62.0 34 82.4
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 2.0e-07 60.8 40 75.0
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.0e-07 60.8 43 72.1
Actinidia37470 Actinidia chinensis HOM05D003815 ORTHO05D004218 2.2e-06 57.4 35 77.1
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 2.2e-06 57.4 57 59.6


User provided reference genes

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