Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 1.2e-107 393.3 212 100.0
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 4.3e-105 384.8 213 98.1
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 7.6e-86 320.9 213 83.6
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 3.2e-84 315.5 213 83.6
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 9.9e-78 293.9 213 77.0
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 3.2e-76 288.9 213 74.6
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 1.9e-73 279.6 212 71.2
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 1.9e-73 279.6 213 71.8
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 4.3e-73 278.5 213 74.6
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 9.6e-73 277.3 213 73.2
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 2.8e-72 275.8 221 70.6
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 1.1e-71 273.9 212 71.2
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.4e-71 273.5 213 70.0
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 3.1e-71 272.3 213 73.2
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 4.0e-71 271.9 213 71.8
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 4.5e-70 268.5 217 69.1
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 5.8e-70 268.1 216 73.6
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 7.6e-70 267.7 213 71.8
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 1.0e-69 267.3 212 71.2
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 2.2e-69 266.2 213 70.9
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 2.9e-69 265.8 216 72.7
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 6.5e-69 264.6 213 70.9
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 6.5e-69 264.6 209 70.3
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 8.4e-69 264.2 206 70.4
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 4.2e-68 261.9 216 71.3
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 1.6e-67 260.0 225 67.1
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 1.6e-67 260.0 211 68.7
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 1.6e-67 260.0 215 68.4
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 2.1e-67 259.6 194 72.2
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 2.1e-67 259.6 207 69.1
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 2.1e-67 259.6 207 69.1
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 7.9e-67 257.7 212 68.9
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 3.9e-66 255.4 211 67.8
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 3.9e-66 255.4 213 69.0
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 5.1e-66 255.0 177 75.7
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 1.5e-65 253.4 216 69.4
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 1.3e-64 250.4 169 77.5
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 2.1e-64 249.6 213 67.1
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 3.7e-64 248.8 213 64.3
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 1.8e-63 246.5 213 65.3
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 5.3e-63 245.0 213 67.1
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 6.9e-63 244.6 208 66.3
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 9.0e-63 244.2 220 65.0
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 1.5e-62 243.4 224 64.7
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 4.5e-62 241.9 169 75.1
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 1.7e-61 240.0 213 62.4
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 3.8e-61 238.8 213 67.1
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 8.4e-61 237.7 213 64.8
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 1.1e-60 237.3 211 62.1
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 2.5e-60 236.1 210 66.7
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 1.2e-59 233.8 209 62.7
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 2.1e-59 233.0 225 60.9
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 2.3e-58 229.6 174 71.8
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 2.3e-58 229.6 174 70.7
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 3.0e-58 229.2 203 63.5
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 3.9e-58 228.8 194 66.0
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 8.7e-58 227.6 215 58.6
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 8.7e-58 227.6 194 66.0
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 3.3e-57 225.7 214 62.1
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 2.2e-56 223.0 214 61.7
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 2.8e-56 222.6 208 59.1
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 8.2e-56 221.1 208 58.2
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 8.2e-56 221.1 214 60.7
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 2.4e-55 219.5 213 63.8
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 3.1e-55 219.2 214 58.9
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 6.9e-55 218.0 210 58.1
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 1.5e-54 216.9 213 56.8
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 3.4e-54 215.7 213 56.8
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 1.0e-53 214.2 214 56.1
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 1.9e-52 209.9 214 60.7
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 3.2e-52 209.1 214 60.3
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 7.2e-52 208.0 256 53.5
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.4e-50 203.8 158 71.5
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 2.3e-50 203.0 145 75.9
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.0e-50 202.6 168 67.3
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 3.9e-50 202.2 148 74.3
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 3.9e-50 202.2 216 56.9
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 5.1e-50 201.8 213 58.2
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 8.8e-50 201.1 170 65.9
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 3.7e-48 195.7 146 73.3
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 4.8e-48 195.3 156 70.5
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 4.8e-48 195.3 157 69.4
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 2.4e-47 193.0 145 72.4
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 2.4e-47 193.0 213 54.5
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 2.0e-46 189.9 214 52.8
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 1.3e-45 187.2 174 54.6
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 5.0e-45 185.3 166 60.8
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 6.5e-45 184.9 186 55.9
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.9e-44 183.3 211 49.8
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 9.4e-44 181.0 216 50.5
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 2.7e-43 179.5 205 51.7
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 1.8e-42 176.8 215 49.8
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 1.8e-42 176.8 211 48.3
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 2.3e-42 176.4 151 62.3
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 3.9e-42 175.6 162 62.3
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 3.3e-41 172.6 151 61.6
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 4.4e-41 172.2 218 52.8
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 1.3e-40 170.6 213 53.5
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 2.2e-40 169.9 175 57.7
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 5.3e-39 165.2 188 44.1
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 2.6e-38 162.9 213 51.6
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 7.7e-38 161.4 217 52.5
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 5.7e-33 145.2 215 49.8
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 5.3e-31 138.7 169 53.3
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 7.0e-31 138.3 209 46.9
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 2.7e-27 126.3 211 35.5
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 3.0e-26 122.9 203 41.9
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 2.0e-25 120.2 133 54.9
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 3.1e-23 112.8 98 64.3
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 5.4e-23 112.1 101 61.4
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 3.8e-21 105.9 183 38.3
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 4.2e-20 102.4 153 36.6
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.7e-19 99.8 89 62.9
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 2.3e-18 96.7 201 39.8
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 7.0e-15 85.1 167 37.7
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 9.2e-15 84.7 95 51.6
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.2e-14 84.3 74 64.9
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 7.7e-14 81.6 167 36.5
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 8.6e-13 78.2 112 41.1
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 7.3e-12 75.1 68 66.2
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 4.7e-11 72.4 140 37.9
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 2.0e-09 67.0 79 50.6
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 2.2e-08 63.5 94 42.6
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 4.9e-08 62.4 42 78.6
Zm00001eb131680 Zea mays HOM05D006133 ORTHO05D446205 2.4e-07 60.1 66 47.0
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 2.4e-07 60.1 66 47.0
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 5.4e-07 58.9 60 55.0
TAR636G0634 Trochodendron aralioides HOM05D006133 ORTHO05D007855 1.2e-06 57.8 141 32.6


User provided reference genes

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