Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 8.9e-195 683.3 325 100.0
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 5.8e-186 654.1 383 84.3
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.6e-178 628.6 325 91.7
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 3.2e-176 621.7 326 90.2
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 9.3e-176 620.2 324 88.9
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 3.5e-175 618.2 322 89.1
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 1.7e-174 615.9 329 89.4
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 1.7e-174 615.9 332 88.6
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 5.1e-174 614.4 325 88.3
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 6.6e-174 614.0 329 87.8
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 5.6e-173 610.9 329 87.8
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 2.8e-172 608.6 328 87.8
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 4.8e-172 607.8 330 87.6
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 1.1e-171 606.7 329 87.8
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.1e-171 606.7 329 87.8
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 1.4e-171 606.3 330 87.6
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.4e-171 606.3 329 87.8
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 1.8e-171 605.9 325 87.1
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 3.1e-171 605.1 327 86.9
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 4.0e-171 604.7 329 87.8
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 6.9e-171 604.0 320 87.5
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 9.0e-171 603.6 332 86.4
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 2.6e-170 602.1 325 87.4
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 4.5e-170 601.3 332 86.1
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 7.6e-170 600.5 323 87.6
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.3e-169 599.7 325 85.8
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.3e-169 599.7 329 87.2
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 1.3e-169 599.7 324 87.0
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.7e-169 599.4 323 85.8
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 2.2e-169 599.0 316 89.6
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.2e-169 599.0 318 88.4
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 2.9e-169 598.6 316 86.7
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 2.9e-169 598.6 325 85.2
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 2.9e-169 598.6 325 86.2
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 8.4e-169 597.0 329 85.4
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 8.4e-169 597.0 324 87.3
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.9e-168 595.9 322 87.6
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.4e-168 595.5 313 87.5
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 3.2e-168 595.1 325 84.6
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.2e-168 595.1 319 87.8
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.2e-168 595.1 329 86.3
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 4.2e-168 594.7 323 87.6
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.2e-167 593.2 323 86.1
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.6e-167 592.8 326 85.0
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 2.1e-167 592.4 317 86.4
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 2.7e-167 592.0 332 84.3
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 3.5e-167 591.7 321 83.5
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 4.6e-167 591.3 315 87.3
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 6.0e-167 590.9 329 85.4
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 7.9e-167 590.5 325 84.0
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 1.0e-166 590.1 329 85.4
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 1.3e-166 589.7 329 85.4
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 5.1e-166 587.8 308 88.0
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 5.1e-166 587.8 326 83.4
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 5.1e-166 587.8 326 83.4
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.1e-165 586.6 325 85.2
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 1.9e-165 585.9 319 83.4
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 1.9e-165 585.9 310 87.7
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 1.9e-165 585.9 326 83.7
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 2.5e-165 585.5 327 84.4
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 2.5e-165 585.5 317 85.5
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 3.3e-165 585.1 322 86.0
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 3.3e-165 585.1 321 84.4
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 4.3e-165 584.7 319 85.6
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 7.4e-165 583.9 328 83.8
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 7.4e-165 583.9 318 86.5
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 7.4e-165 583.9 324 84.3
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 7.4e-165 583.9 320 85.0
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 7.4e-165 583.9 322 83.2
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 1.6e-164 582.8 318 86.8
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 2.1e-164 582.4 324 84.3
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.8e-164 582.0 320 84.7
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 8.1e-164 580.5 320 83.8
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 2.4e-163 578.9 323 84.5
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 3.1e-163 578.6 319 83.1
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 3.1e-163 578.6 319 85.0
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 3.1e-163 578.6 323 84.5
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 4.0e-163 578.2 323 84.5
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 5.3e-163 577.8 324 84.9
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 6.9e-163 577.4 319 84.0
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 6.9e-163 577.4 319 84.0
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 9.0e-163 577.0 321 84.1
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 9.0e-163 577.0 304 89.5
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 9.0e-163 577.0 323 82.7
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 1.2e-162 576.6 325 82.8
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 2.6e-162 575.5 324 82.7
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 2.6e-162 575.5 314 85.7
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 5.8e-162 574.3 324 80.9
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 7.6e-162 573.9 329 82.4
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 1.7e-161 572.8 324 82.1
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 1.7e-161 572.8 324 82.1
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 7.1e-160 567.4 324 81.5
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 7.1e-160 567.4 324 81.5
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 4.6e-159 564.7 325 81.5
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 6.7e-158 560.8 327 82.0
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 4.3e-157 558.1 319 82.4
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 7.4e-157 557.4 322 79.5
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 1.3e-156 556.6 320 82.2
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 4.8e-156 554.7 325 80.0
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 8.2e-156 553.9 325 78.8
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 7.6e-154 547.4 331 79.5
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 2.2e-153 545.8 331 79.2
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 2.2e-153 545.8 325 78.5
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 1.4e-152 543.1 336 75.9
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 6.3e-148 527.7 333 75.4
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 8.2e-148 527.3 304 80.3
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 9.0e-147 523.9 279 86.4
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.5e-146 523.1 312 76.6
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 2.5e-144 515.8 295 79.0
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 9.4e-144 513.8 305 80.3
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 6.1e-143 511.1 308 76.3
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 4.8e-140 501.5 263 88.6
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 2.6e-138 495.7 279 84.2
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 5.5e-136 488.0 338 71.9
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 1.6e-135 486.5 317 70.0
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.7e-129 466.5 310 68.1
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.7e-129 466.5 310 68.1
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 1.1e-128 463.8 312 66.0
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.6e-127 459.9 309 67.3
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 2.0e-125 453.0 251 82.1
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 3.6e-119 432.2 311 62.1
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 4.4e-117 425.2 230 86.5
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 3.3e-104 382.5 318 57.9
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 1.6e-103 380.2 253 70.4
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 6.6e-97 358.2 215 76.7
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 1.7e-89 333.6 316 52.2
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 1.1e-83 314.3 352 45.2
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 7.3e-72 275.0 360 40.6
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.0e-57 228.0 123 82.1
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.1e-32 144.8 82 81.7
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 5.3e-30 136.0 89 75.3
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 5.3e-22 109.4 74 73.0
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 2.7e-18 97.1 68 69.1
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 7.4e-16 89.0 47 83.0
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 3.1e-14 83.6 50 76.0
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 9.1e-14 82.0 41 85.4
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 4.5e-13 79.7 52 69.2
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 2.0e-08 64.3 42 64.3


User provided reference genes

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