Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 0.0e+00 1419.4 748 100.0
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 0.0e+00 1179.5 654 95.6
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 4.3e-309 1064.3 747 76.6
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.6e-303 1045.8 748 75.5
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 1.1e-237 827.0 750 61.3
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 5.7e-237 824.7 758 62.0
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 2.9e-233 812.4 754 60.9
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 1.0e-230 803.9 751 59.1
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 3.7e-228 795.4 747 60.4
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 3.8e-225 785.4 746 61.0
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.7e-223 779.2 752 59.0
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 8.0e-223 777.7 753 59.0
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 1.4e-222 776.9 747 60.0
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 3.4e-221 772.3 752 58.9
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 5.7e-221 771.5 752 58.9
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 3.1e-219 765.8 752 58.4
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 3.1e-219 765.8 752 57.7
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 5.4e-219 765.0 748 58.4
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 7.7e-218 761.1 746 57.2
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 2.9e-217 759.2 755 57.2
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 8.9e-214 747.7 745 57.0
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 4.1e-211 738.8 750 57.1
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 1.6e-210 736.9 759 56.8
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 3.9e-209 732.3 742 57.0
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 7.3e-208 728.0 755 55.1
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.8e-206 723.4 750 54.9
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 2.9e-204 716.1 755 54.2
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.7e-201 706.8 752 53.3
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 1.1e-200 704.1 710 56.2
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.1e-200 704.1 746 52.8
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 1.5e-200 703.7 750 52.8
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.9e-200 703.4 722 54.7
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.9e-200 703.4 750 52.8
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 5.6e-200 701.8 718 55.8
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 4.7e-199 698.7 748 53.7
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 1.8e-198 696.8 756 54.4
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 5.2e-198 695.3 738 53.8
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 2.0e-197 693.3 739 54.0
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 2.9e-196 689.5 748 52.7
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 5.1e-193 678.7 758 55.8
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 5.1e-193 678.7 749 52.5
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 5.6e-192 675.2 731 52.1
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 2.1e-191 673.3 748 52.0
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 1.8e-190 670.2 750 52.3
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 2.2e-180 636.7 785 49.0
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 1.0e-177 627.9 732 50.3
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 1.6e-175 620.5 744 51.5
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 1.9e-168 597.0 751 48.5
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 4.9e-164 582.4 753 47.7
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.1e-163 581.3 741 47.4
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 4.6e-162 575.9 722 48.1
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.6e-157 560.1 793 45.8
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.6e-157 560.1 793 45.8
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 3.5e-154 549.7 745 46.2
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.3e-153 547.7 735 46.5
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 5.1e-153 545.8 740 44.9
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 1.1e-152 544.7 783 44.2
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 1.1e-152 544.7 755 45.7
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 9.6e-152 541.6 753 45.6
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 4.1e-150 536.2 742 44.5
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 2.6e-149 533.5 738 44.6
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 1.1e-147 528.1 757 44.6
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 7.9e-146 521.9 547 56.7
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.3e-145 521.2 682 48.1
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 1.9e-144 517.3 731 45.0
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 1.3e-140 504.6 741 43.5
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 3.8e-140 503.1 833 41.7
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 5.5e-139 499.2 763 41.7
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 1.7e-135 487.6 748 42.6
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 5.5e-131 472.6 746 43.3
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 1.0e-129 468.4 730 41.5
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 5.2e-129 466.1 604 46.0
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 1.5e-128 464.5 734 44.1
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 3.5e-125 453.4 738 41.7
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 4.1e-118 429.9 301 75.1
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 5.2e-113 412.9 687 42.4
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 4.5e-109 399.8 331 64.7
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 3.2e-107 393.7 489 50.1
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 3.5e-101 373.6 782 36.3
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.3e-92 344.4 386 53.1
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 4.4e-88 330.1 243 70.0
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 7.5e-88 329.3 531 42.7
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 1.5e-83 315.1 553 40.0
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 1.8e-81 308.1 301 54.5
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 2.6e-80 304.3 264 59.1
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 1.9e-59 235.0 328 47.9
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 1.1e-54 219.2 260 47.7
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 1.1e-49 202.6 444 35.1
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 4.0e-49 200.7 157 66.2
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 6.4e-47 193.4 158 64.6
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 2.1e-42 178.3 202 51.5
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 3.8e-31 141.0 102 66.7
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 7.4e-27 126.7 156 48.7
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 6.9e-25 120.2 189 40.2
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 3.0e-20 104.8 74 67.6
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 2.4e-17 95.1 83 57.8
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 2.4e-17 95.1 83 53.0
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 1.1e-14 86.3 111 45.9
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 2.6e-11 75.1 239 27.2
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 3.1e-09 68.2 154 34.4
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 2.2e-07 62.0 137 32.8


User provided reference genes

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