Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 2.8e-258 894.8 472 100.0
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 8.9e-220 766.9 416 93.0
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 8.2e-165 584.3 344 84.6
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 6.9e-164 581.3 341 85.3
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 6.3e-157 558.1 341 81.8
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 2.5e-153 546.2 338 78.4
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 7.2e-153 544.7 338 79.0
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 4.7e-152 542.0 341 80.1
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 4.7e-152 542.0 341 79.2
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 6.1e-152 541.6 341 78.9
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 1.4e-151 540.4 341 78.6
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.5e-150 537.0 341 78.3
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.5e-150 537.0 338 78.1
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 1.5e-150 537.0 338 79.0
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 1.5e-150 537.0 338 79.6
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 1.5e-150 537.0 341 76.5
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 3.3e-150 535.8 338 79.9
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 3.3e-150 535.8 338 79.3
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 7.4e-150 534.6 341 77.7
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 1.3e-149 533.9 338 78.4
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 1.3e-149 533.9 341 78.3
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 1.7e-149 533.5 341 78.3
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 1.7e-149 533.5 340 77.9
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 4.8e-149 531.9 341 78.0
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 6.3e-149 531.6 359 74.7
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 3.1e-148 529.3 343 75.8
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 4.1e-148 528.9 338 76.9
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 5.3e-148 528.5 341 76.0
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 2.0e-147 526.6 343 74.9
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 2.6e-147 526.2 338 78.1
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 3.5e-147 525.8 350 74.0
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 4.5e-147 525.4 340 76.8
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 7.7e-147 524.6 337 77.2
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 7.7e-147 524.6 338 78.7
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 1.0e-146 524.2 384 69.5
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 2.2e-146 523.1 332 78.9
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 2.9e-146 522.7 338 78.1
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 3.8e-146 522.3 338 77.2
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 6.5e-146 521.5 381 69.6
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 1.1e-145 520.8 381 69.6
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.1e-145 520.8 341 76.8
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 3.2e-145 519.2 343 74.3
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 4.2e-145 518.8 342 73.4
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 9.4e-145 517.7 338 76.0
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 1.2e-144 517.3 341 75.4
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 1.6e-144 516.9 339 76.1
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 2.7e-144 516.2 341 72.4
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 1.8e-143 513.5 332 77.4
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 1.2e-142 510.8 338 75.1
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 1.2e-142 510.8 343 75.2
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 3.3e-142 509.2 341 74.2
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 5.7e-142 508.4 341 75.1
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 1.0e-138 497.7 338 74.3
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 2.9e-138 496.1 338 72.8
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 6.5e-138 495.0 341 70.4
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 3.2e-137 492.7 338 73.1
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 5.5e-137 491.9 338 71.9
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 1.6e-136 490.3 338 71.3
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.1e-136 490.0 338 71.9
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 2.7e-136 489.6 347 70.9
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 2.3e-135 486.5 346 71.1
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 2.3e-135 486.5 338 71.9
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 5.2e-135 485.3 338 72.2
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 5.2e-135 485.3 342 71.1
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 6.8e-135 485.0 341 69.2
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 1.5e-134 483.8 338 71.3
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 3.4e-134 482.6 341 68.9
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 2.8e-133 479.6 365 66.6
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 2.8e-133 479.6 328 72.9
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 4.1e-132 475.7 338 69.5
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 9.1e-132 474.6 340 69.7
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 5.9e-131 471.9 340 69.1
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 1.7e-130 470.3 338 69.8
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 2.3e-130 469.9 341 70.7
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 2.3e-130 469.9 342 68.7
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 2.9e-130 469.5 341 68.3
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 5.0e-130 468.8 342 68.1
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 6.6e-130 468.4 339 66.4
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 1.1e-129 467.6 343 68.5
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 1.1e-129 467.6 343 68.5
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 7.2e-129 464.9 341 71.0
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 1.2e-128 464.2 339 69.0
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.2e-128 464.2 339 69.0
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 1.2e-128 464.2 339 69.0
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 3.6e-128 462.6 341 66.3
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 3.6e-128 462.6 404 62.1
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 8.0e-128 461.5 346 68.2
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 1.8e-127 460.3 338 69.2
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 2.3e-127 459.9 311 73.6
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.3e-127 459.9 338 68.9
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.5e-126 457.2 356 66.0
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 4.4e-126 455.7 338 66.3
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 4.9e-125 452.2 349 67.0
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 1.7e-122 443.7 333 67.6
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 1.5e-121 440.7 310 70.0
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 1.2e-118 431.0 345 63.8
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 3.4e-118 429.5 333 65.8
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 4.4e-118 429.1 269 77.7
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 1.7e-114 417.2 342 62.6
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 3.0e-114 416.4 253 82.6
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 1.9e-113 413.7 292 70.9
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 4.3e-113 412.5 338 64.8
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 5.8e-110 402.1 250 78.0
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 3.6e-104 382.9 395 51.9
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 9.5e-97 358.2 333 56.8
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 6.2e-96 355.5 333 51.4
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 2.6e-94 350.1 341 51.9
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 4.4e-94 349.4 336 54.5
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 3.8e-93 346.3 334 50.3
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 6.4e-93 345.5 334 49.7
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 1.5e-81 307.8 196 80.1
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 1.4e-79 301.2 295 52.2
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 3.7e-72 276.6 334 47.6
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 8.4e-69 265.4 358 40.2
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 8.7e-66 255.4 208 61.1
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 1.6e-56 224.6 182 65.4
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 5.1e-50 203.0 108 89.8
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.3e-48 198.4 156 61.5
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 3.3e-41 173.7 367 33.0
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-38 164.5 201 50.2
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 1.1e-33 148.7 102 72.5
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 3.7e-32 143.7 112 61.6
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 4.7e-19 100.1 106 43.4
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 1.3e-16 92.0 59 72.9
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 8.3e-16 89.4 92 43.5
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 5.2e-10 70.1 157 32.5
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 1.7e-08 65.1 57 47.4
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 5.4e-07 60.1 33 78.8
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 9.2e-07 59.3 33 81.8


User provided reference genes

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