Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 0.0e+00 1713.0 884 100.0
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 0.0e+00 1634.4 872 96.8
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 0.0e+00 1285.4 898 78.5
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 0.0e+00 1269.2 904 77.0
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 0.0e+00 1182.2 781 80.3
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 0.0e+00 1100.1 909 67.0
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 7.1e-303 1043.9 909 64.2
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.1e-302 1042.3 894 65.0
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 4.7e-299 1031.2 933 64.1
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 1.4e-295 1019.6 923 62.3
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 2.1e-294 1015.8 914 62.8
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 7.8e-294 1013.8 894 63.9
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 6.9e-290 1000.7 913 62.7
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 6.9e-290 1000.7 911 62.6
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 1.5e-284 983.0 942 61.5
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.3e-282 974.5 871 63.5
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 9.0e-282 973.8 938 61.6
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 9.9e-281 970.3 965 59.6
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 1.4e-279 966.5 944 61.2
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 1.6e-278 963.0 911 61.3
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 4.6e-278 961.4 940 61.5
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 6.7e-277 957.6 917 61.4
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 1.5e-276 956.4 925 60.3
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 6.2e-275 951.0 888 62.4
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 4.0e-274 948.3 934 60.7
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 1.5e-273 946.4 915 60.8
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.2e-272 942.6 970 58.2
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 1.9e-271 939.5 924 58.5
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.2e-271 938.3 971 57.9
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 7.1e-271 937.6 906 59.6
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 2.7e-270 935.6 894 61.6
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 6.0e-270 934.5 995 55.8
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 1.1e-268 930.2 970 57.5
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 7.4e-268 927.5 735 68.8
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.1e-267 926.0 969 57.8
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 2.8e-267 925.6 889 61.5
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 3.7e-267 925.2 911 61.7
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.8e-266 922.9 901 60.4
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.4e-266 922.5 913 60.6
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.3e-266 921.4 970 57.7
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 1.2e-265 920.2 940 56.9
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 2.6e-265 919.1 901 60.2
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 5.9e-265 917.9 884 61.1
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.1e-263 913.7 800 64.2
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 5.1e-261 904.8 915 58.6
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 4.3e-260 901.7 979 55.8
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 2.6e-257 892.5 1090 51.1
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 3.8e-256 888.6 977 55.9
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 8.5e-256 887.5 953 56.3
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 2.7e-254 882.5 910 58.9
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.4e-253 880.2 921 57.8
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.8e-253 879.8 907 58.0
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 6.7e-253 877.9 908 57.5
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 2.0e-252 876.3 973 54.5
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 2.4e-250 869.4 894 57.4
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 1.0e-248 864.0 817 60.6
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 1.4e-247 860.1 844 59.1
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.6e-246 855.5 918 56.8
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 6.1e-246 854.7 1027 53.7
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 1.4e-245 853.6 965 55.1
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 3.0e-245 852.4 1009 52.0
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.7e-243 846.7 980 53.4
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.0e-240 837.4 921 55.9
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.7e-240 836.6 902 56.8
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 2.9e-240 835.9 924 55.0
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 6.5e-240 834.7 959 53.4
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.1e-238 829.7 920 55.5
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 8.0e-238 827.8 920 55.4
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 1.0e-237 827.4 893 56.3
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.8e-234 816.6 921 55.2
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 7.0e-234 814.7 935 52.9
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 5.9e-233 811.6 885 53.4
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 5.7e-228 795.0 978 50.6
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.7e-225 786.2 888 53.3
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.3e-224 783.9 889 53.2
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.1e-223 780.8 909 53.4
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.2e-222 777.3 955 51.8
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.8e-221 773.5 905 53.7
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 2.2e-219 766.5 798 57.3
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.4e-218 763.8 778 56.7
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 2.0e-217 760.0 1010 48.2
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.3e-216 756.5 790 56.3
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 5.0e-216 755.4 899 51.7
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 6.6e-216 755.0 791 55.1
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.2e-214 750.7 839 52.8
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 2.8e-214 749.6 911 51.7
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 1.0e-213 747.7 1016 47.6
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.5e-212 743.8 899 52.1
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 5.7e-212 741.9 898 50.8
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 9.8e-212 741.1 886 52.7
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 1.7e-211 740.3 902 51.1
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 8.3e-211 738.0 911 51.3
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 4.1e-210 735.7 902 50.8
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 1.2e-209 734.2 903 50.9
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 1.0e-208 731.1 902 50.4
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 3.0e-208 729.6 905 50.4
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 2.5e-207 726.5 935 49.5
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 7.3e-207 724.9 1063 46.7
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 9.5e-207 724.5 901 51.1
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 3.6e-206 722.6 943 49.5
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 4.7e-206 722.2 931 49.5
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 6.2e-206 721.8 893 50.5
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 8.0e-206 721.5 797 53.3
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 2.6e-204 716.5 815 52.6
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 6.4e-203 711.8 849 51.5
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.1e-202 711.1 900 49.8
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.1e-202 711.1 900 49.8
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.2e-201 707.6 968 48.0
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 2.8e-198 696.4 967 47.6
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 4.7e-198 695.7 770 54.4
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 3.1e-197 693.0 897 49.1
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.2e-196 691.0 896 47.8
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.2e-196 691.0 805 52.4
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 4.9e-195 685.6 931 47.7
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 5.4e-194 682.2 916 49.8
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 7.1e-194 681.8 933 47.9
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 1.0e-192 677.9 882 48.6
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.1e-189 667.9 897 48.2
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 3.1e-189 666.4 921 48.5
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 7.1e-186 655.2 923 47.2
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.6e-185 652.5 850 47.8
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.3e-184 651.0 850 47.6
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 6.6e-184 648.7 921 46.5
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 6.2e-182 642.1 884 47.4
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.1e-167 594.7 937 44.2
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 6.9e-165 585.5 818 45.4
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 4.6e-161 572.8 906 42.7
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 9.7e-143 511.9 768 44.8
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 3.2e-138 496.9 804 43.4
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.6e-119 434.1 824 38.0
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.6e-119 434.1 824 38.0
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 3.3e-119 433.7 891 37.0
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.0e-116 424.5 537 50.5
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 1.0e-112 412.1 661 42.2
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.8e-112 411.4 370 64.6
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 2.3e-107 394.4 784 36.4
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.8e-101 374.8 336 62.2
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.2e-94 351.3 375 57.1
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.6e-92 345.1 285 64.2
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 3.9e-91 340.5 363 57.6
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.3e-78 298.9 386 50.0
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 2.2e-78 298.1 970 29.8
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 2.5e-74 284.6 464 43.3
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 4.2e-69 267.3 261 59.8
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 1.2e-63 249.2 271 52.4
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.9e-53 215.3 137 80.3
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 7.1e-53 213.4 482 35.1
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 4.9e-38 164.1 219 48.4
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.7e-36 158.3 180 53.3
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 8.7e-35 153.3 204 45.1
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.3e-34 151.0 92 83.7
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 2.2e-33 148.7 198 52.0
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.1e-32 144.4 161 54.0
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.2e-31 142.9 168 47.6
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 2.2e-30 138.7 156 46.8
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 2.1e-28 132.1 86 77.9
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.1e-24 119.8 79 77.2
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 2.4e-24 118.6 113 54.9
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 1.4e-21 109.4 84 66.7
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 1.2e-20 106.3 65 80.0
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 3.6e-20 104.8 71 74.6
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 6.1e-20 104.0 118 48.3
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 6.1e-20 104.0 89 59.6
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 7.9e-20 103.6 57 91.2
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 2.6e-18 98.6 89 57.3
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 4.4e-18 97.8 115 51.3
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 7.4e-18 97.1 93 54.8
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.7e-17 95.9 62 69.4
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 5.3e-16 90.9 97 49.5
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.3e-14 86.3 59 79.7
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.3e-14 86.3 69 62.3
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.2e-13 81.6 92 53.3
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 2.7e-12 78.6 101 49.5
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 3.0e-11 75.1 60 60.0
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 3.0e-11 75.1 126 40.5
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.2e-11 74.3 143 44.8
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 6.7e-11 73.9 133 40.6
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 4.4e-10 71.2 44 81.8
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.2e-09 68.9 45 71.1
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 1.4e-08 66.2 64 53.1
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 3.5e-07 61.6 62 51.6
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 3.8e-06 58.2 45 55.6
COL.COLO4_08259 Corchorus olitorius HOM05D000149 ORTHO05D000076 5.0e-06 57.8 44 63.6
MBI19_g07393_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D004199 8.5e-06 57.0 59 45.8


User provided reference genes

Program Settings