Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000387 Carpinus fangiana HOM05D007185 ORTHO05D009016 3.3e-49 198.0 95 100.0
Haze_06539 Corylus avellana HOM05D007185 ORTHO05D009016 6.5e-45 183.7 96 93.8
CiPaw.09G053500 Carya illinoinensis HOM05D007185 ORTHO05D009016 1.4e-36 156.0 95 82.1
CiPaw.10G045100 Carya illinoinensis HOM05D007185 ORTHO05D009016 7.9e-35 150.2 95 76.8
Manes.17G041400 Manihot esculenta HOM05D007185 ORTHO05D009016 1.2e-27 126.3 93 62.4
Prupe.4G040400 Prunus persica HOM05D007185 ORTHO05D009016 1.0e-26 123.2 99 63.6
Lj6g0018466 Lotus japonicus HOM05D007185 ORTHO05D009016 4.0e-26 121.3 97 60.8
Manes.16G023500 Manihot esculenta HOM05D007185 ORTHO05D009016 1.2e-25 119.8 93 59.1
Psat1g206960 Pisum sativum HOM05D007185 ORTHO05D009016 1.2e-25 119.8 99 58.6
Ca_00300_v3 Cicer arietinum L. HOM05D007185 ORTHO05D009016 1.3e-24 116.3 95 58.9
Glyma.15G069900 Glycine max HOM05D007185 ORTHO05D009016 2.8e-24 115.2 95 61.1
Thecc.06G194500 Theobroma cacao HOM05D007185 ORTHO05D009016 3.7e-24 114.8 93 58.1
Phvul.006G189400 Phaseolus vulgaris HOM05D007185 ORTHO05D009016 6.3e-24 114.0 97 61.9
TPR.G36776 Trifolium pratense HOM05D007185 ORTHO05D009016 6.3e-24 114.0 102 57.8
Ciclev10017305m.g Citrus clementina HOM05D007185 ORTHO05D009016 8.2e-24 113.6 95 56.8
MD05G1322400 Malus domestica HOM05D007185 ORTHO05D009016 1.8e-23 112.5 101 59.4
Glyma.13G243800 Glycine max HOM05D007185 ORTHO05D009016 4.1e-23 111.3 95 57.9
RcHm_v2.0_Chr5g0007481 Rosa chinensis HOM05D007185 ORTHO05D009016 4.1e-23 111.3 96 58.3
FvH4_6g14200 Fragaria vesca HOM05D007185 ORTHO05D009016 2.0e-22 109.0 96 58.3
FAN05G3455 Fragaria x ananassa HOM05D007185 ORTHO05D009016 2.0e-22 109.0 96 58.3
FAN14G1513 Fragaria x ananassa HOM05D007185 ORTHO05D009016 2.0e-22 109.0 96 58.3
Medtr2g012800 Medicago truncatula HOM05D007185 ORTHO05D009016 2.0e-22 109.0 102 55.9
Lalb_Chr15g0089951 Lupinus albus HOM05D007185 ORTHO05D009016 2.7e-22 108.6 101 56.4
arahy.Tifrunner.gnm1.ann1.5HQW77 Arachis hypogaea HOM05D007185 ORTHO05D009016 1.0e-21 106.7 101 57.4
arahy.Tifrunner.gnm1.ann1.D3DKTB Arachis hypogaea HOM05D007185 ORTHO05D009016 2.2e-21 105.5 101 56.4
ClCG01G022750 Citrullus lanatus HOM05D007185 ORTHO05D009016 2.2e-21 105.5 96 56.2
FAN09G3112 Fragaria x ananassa HOM05D007185 ORTHO05D009016 2.9e-21 105.1 96 57.3
COL.COLO4_31534 Corchorus olitorius HOM05D007185 ORTHO05D009016 5.0e-21 104.4 99 55.6
Oeu053961.1 Olea europaea HOM05D007185 ORTHO05D009016 6.5e-21 104.0 91 57.1
MELO3C002569.2 Cucumis melo HOM05D007185 ORTHO05D009016 8.5e-21 103.6 90 56.7
Lalb_Chr18g0059811 Lupinus albus HOM05D007185 ORTHO05D009016 1.9e-20 102.4 94 58.5
Potri.004G037500 Populus trichocarpa HOM05D007185 ORTHO05D009016 2.5e-20 102.1 93 55.9
CsaV3_1G011920 Cucumis sativus L. HOM05D007185 ORTHO05D009016 4.2e-20 101.3 93 58.1
FAN16G0756 Fragaria x ananassa HOM05D007185 ORTHO05D009016 5.5e-20 100.9 92 57.6
ClCG03G005660 Citrullus lanatus HOM05D007185 ORTHO05D009016 1.6e-19 99.4 91 54.9
FAN21G1120 Fragaria x ananassa HOM05D007185 ORTHO05D009016 1.6e-19 99.4 92 56.5
FAN25G2721 Fragaria x ananassa HOM05D007185 ORTHO05D009016 1.6e-19 99.4 92 56.5
Lalb_Chr20g0122101 Lupinus albus HOM05D007185 ORTHO05D009016 2.1e-19 99.0 106 52.8
Actinidia05600 Actinidia chinensis HOM05D007185 ORTHO05D009016 3.6e-19 98.2 94 55.3
Gohir.D10G023700 Gossypium hirsutum HOM05D007185 ORTHO05D009016 3.6e-19 98.2 91 51.6
Gorai.011G024800 Gossypium raimondii HOM05D007185 ORTHO05D009016 3.6e-19 98.2 91 51.6
Atru.chr10.1968 Acer truncatum HOM05D007185 ORTHO05D009016 8.0e-19 97.1 101 49.5
Gohir.A05G163200 Gossypium hirsutum HOM05D007185 ORTHO05D009016 2.3e-18 95.5 91 53.8
MELO3C007306.2 Cucumis melo HOM05D007185 ORTHO05D009016 4.0e-18 94.7 96 51.0
FvH4_3g04560 Fragaria vesca HOM05D007185 ORTHO05D009016 4.0e-18 94.7 92 54.3
FAN11G2592 Fragaria x ananassa HOM05D007185 ORTHO05D009016 4.0e-18 94.7 92 54.3
Gohir.D05G166000 Gossypium hirsutum HOM05D007185 ORTHO05D009016 1.5e-17 92.8 91 53.8
Gorai.009G171200 Gossypium raimondii HOM05D007185 ORTHO05D009016 1.5e-17 92.8 91 53.8
Potri.011G046112 Populus trichocarpa HOM05D007185 ORTHO05D009016 1.5e-17 92.8 92 52.2
Nn1g03963 Nelumbo nucifera HOM05D007185 ORTHO05D009016 4.4e-17 91.3 93 48.4
Sabra04G0022700 Salix brachista HOM05D007185 ORTHO05D009016 4.4e-17 91.3 95 51.6
Gohir.A10G022900 Gossypium hirsutum HOM05D007185 ORTHO05D009016 5.7e-17 90.9 91 49.5
Sed0016146 Sechium edule HOM05D007185 ORTHO05D009016 7.5e-17 90.5 94 53.2
Cpa.g.sc27.90 Carica papaya HOM05D007185 ORTHO05D009016 1.3e-16 89.7 91 50.5
HanXRQChr09g0263951 Helianthus annuus HOM05D007185 ORTHO05D009016 1.3e-16 89.7 109 48.6
Sed0006501 Sechium edule HOM05D007185 ORTHO05D009016 4.8e-16 87.8 61 65.6
Hma1.2p1_0835F.1_g225880 Hydrangea macrophylla HOM05D007185 ORTHO05D009016 6.3e-16 87.4 63 68.3
Aqoxy4G01278 Aquilegia oxysepala HOM05D007185 ORTHO05D009016 2.4e-15 85.5 91 46.2
Sed0025622 Sechium edule HOM05D007185 ORTHO05D009016 9.1e-15 83.6 85 54.1
Sabra11G0031900 Salix brachista HOM05D007185 ORTHO05D009016 2.0e-14 82.4 89 48.3
Aqoxy1G01214 Aquilegia oxysepala HOM05D007185 ORTHO05D009016 2.7e-14 82.0 93 43.0
Gohir.A09G071400 Gossypium hirsutum HOM05D007185 ORTHO05D009016 5.9e-14 80.9 54 68.5
Gohir.1Z049398 Gossypium hirsutum HOM05D007185 ORTHO05D009016 7.7e-14 80.5 54 68.5
Gohir.D09G071200 Gossypium hirsutum HOM05D007185 ORTHO05D009016 7.7e-14 80.5 54 68.5
Gorai.006G086100 Gossypium raimondii HOM05D007185 ORTHO05D009016 7.7e-14 80.5 54 68.5
MBI18_g13206_MAGBIO Magnolia biondii HOM05D007185 ORTHO05D009016 5.0e-13 77.8 81 51.9
EL10Ac8g20292 Beta vulgaris HOM05D007185 ORTHO05D009016 8.6e-13 77.0 62 61.3
Rhsim13G0175900 Rhododendron simsii HOM05D007185 ORTHO05D009016 1.1e-12 76.6 117 42.7
Sc17g0006400 Simmondsia chinensis HOM05D007185 ORTHO05D009016 1.1e-12 76.6 105 40.0
ATR0693G421 Amborella trichopoda HOM05D007185 ORTHO05D009016 1.9e-12 75.9 54 59.3
Lsat_1_v5_gn_7_20060 Lactuca sativa HOM05D007185 ORTHO05D009016 2.5e-12 75.5 106 46.2
Migut.H01502 Erythranthe guttata HOM05D007185 ORTHO05D009016 6.1e-11 70.9 96 42.7
Sopen03g002590 Solanum pennellii HOM05D007185 ORTHO05D009016 6.1e-11 70.9 89 50.6
PGSC0003DMG400005083 Solanum tuberosum HOM05D007185 ORTHO05D009016 8.0e-11 70.5 89 51.7
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 1.0e-10 70.1 85 45.9
SGA_v2.0_scaffold22G09753 Striga asiatica HOM05D007185 ORTHO05D009016 1.4e-10 69.7 78 53.8
PSO210G6717 Papaver somniferum HOM05D007185 ORTHO05D009016 3.4e-09 65.1 79 46.8
TAR629G0868 Trochodendron aralioides HOM05D007185 ORTHO05D009016 7.5e-09 63.9 49 57.1
unitig_744.g24533 Utricularia gibba HOM05D007185 ORTHO05D009016 9.8e-09 63.5 90 37.8
Nn3g18559 Nelumbo nucifera HOM05D007185 ORTHO05D009016 2.2e-08 62.4 47 59.6
unitig_26.g9366 Utricularia gibba HOM05D007185 ORTHO05D009016 2.2e-08 62.4 58 51.7
unitig_21.g20222 Utricularia gibba HOM05D007185 ORTHO05D009016 2.8e-08 62.0 88 36.4
Eucgr.E03362 Eucalyptus grandis HOM05D007185 ORTHO05D009016 1.1e-07 60.1 107 39.3
Manes.04G161900 Manihot esculenta HOM05D007185 ORTHO05D009016 1.4e-07 59.7 48 54.2
Potri.007G000801 Populus trichocarpa HOM05D007185 ORTHO05D009016 1.8e-07 59.3 48 58.3
THA.LOC104819117 Tarenaya hassleriana HOM05D011034 ORTHO05D013144 1.8e-07 59.3 96 41.7
Cpa.g.c35461 Carica papaya HOM05D007185 ORTHO05D009016 4.1e-07 58.2 45 53.3
vmacro03831 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 4.1e-07 58.2 56 53.6
Lj4g0016899 Lotus japonicus HOM05D007185 ORTHO05D009016 2.7e-06 55.5 41 61.0
Gorai.008G147600 Gossypium raimondii HOM05D007185 ORTHO05D009016 3.5e-06 55.1 48 54.2
Thecc.02G153300 Theobroma cacao HOM05D007185 ORTHO05D009016 4.5e-06 54.7 48 54.2
COL.COLO4_33132 Corchorus olitorius HOM05D007185 ORTHO05D009016 5.9e-06 54.3 49 53.1
Gohir.A12G132900 Gossypium hirsutum HOM05D007185 ORTHO05D009016 5.9e-06 54.3 48 52.1
QL01p000564 Quercus lobata HOM05D007185 ORTHO05D009016 7.8e-06 53.9 49 55.1


User provided reference genes

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