Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000373 Carpinus fangiana HOM05D007756 ORTHO05D009403 1.2e-26 122.5 63 100.0
Cfa000372 Carpinus fangiana HOM05D007756 ORTHO05D009403 1.3e-22 109.0 63 93.7
Manes.16G038800 Manihot esculenta HOM05D007756 ORTHO05D009403 1.5e-10 68.9 61 68.9
Prupe.4G039200 Prunus persica HOM05D007756 ORTHO05D009403 1.7e-09 65.5 51 72.5
CiPaw.09G159700 Carya illinoinensis HOM05D007756 ORTHO05D009403 3.8e-09 64.3 49 73.5
Nn1g06699 Nelumbo nucifera HOM05D007756 ORTHO05D009403 8.5e-09 63.2 56 67.9
Thecc.06G196200 Theobroma cacao HOM05D007756 ORTHO05D009403 1.4e-08 62.4 54 63.0
CiPaw.09G159600 Carya illinoinensis HOM05D007756 ORTHO05D009403 2.5e-08 61.6 49 71.4
Gohir.A05G164200 Gossypium hirsutum HOM05D007756 ORTHO05D009403 2.5e-08 61.6 54 59.3
Gorai.009G172100 Gossypium raimondii HOM05D007756 ORTHO05D009403 2.5e-08 61.6 54 59.3
Gohir.D10G020400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 3.2e-08 61.2 51 62.7
CiPaw.10G120600 Carya illinoinensis HOM05D007756 ORTHO05D009403 5.5e-08 60.5 50 72.0
Prupe.4G039100 Prunus persica HOM05D007756 ORTHO05D009403 5.5e-08 60.5 62 61.3
Gohir.D10G020250 Gossypium hirsutum HOM05D007756 ORTHO05D009403 7.2e-08 60.1 51 60.8
VMungo0251G2707 Vigna mungo HOM05D007756 ORTHO05D009403 9.4e-08 59.7 55 65.5
Eucgr.E03374 Eucalyptus grandis HOM05D007756 ORTHO05D009403 1.6e-07 58.9 42 73.8
Gohir.D05G167100 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.6e-07 58.9 54 57.4
TAR679G0001 Trochodendron aralioides HOM05D007756 ORTHO05D009403 1.6e-07 58.9 50 64.0
Phvul.002G223500 Phaseolus vulgaris HOM05D007756 ORTHO05D009403 2.1e-07 58.5 55 63.6
Gohir.A10G019600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 2.7e-07 58.2 50 60.0
RcHm_v2.0_Chr5g0006771 Rosa chinensis HOM05D007756 ORTHO05D009403 3.6e-07 57.8 46 65.2
RcHm_v2.0_Chr5g0006781 Rosa chinensis HOM05D007756 ORTHO05D009403 3.6e-07 57.8 46 65.2
Eucgr.E03372 Eucalyptus grandis HOM05D007756 ORTHO05D009403 4.6e-07 57.4 54 61.1
Glyma.07G191400 Glycine max HOM05D007756 ORTHO05D009403 7.9e-07 56.6 57 68.4
MD10G1301200 Malus domestica HOM05D007756 ORTHO05D009403 7.9e-07 56.6 49 67.3
Gohir.A10G019400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.0e-06 56.2 46 60.9
Potri.004G036375 Populus trichocarpa HOM05D007756 ORTHO05D009403 1.0e-06 56.2 43 67.4
Cfa000371 Carpinus fangiana HOM05D007756 ORTHO05D009403 1.4e-06 55.8 61 54.1
MD05G1323400 Malus domestica HOM05D007756 ORTHO05D009403 1.4e-06 55.8 45 68.9
Eucgr.E03373 Eucalyptus grandis HOM05D007756 ORTHO05D009403 1.8e-06 55.5 46 67.4
Eucgr.E03371 Eucalyptus grandis HOM05D007756 ORTHO05D009403 2.3e-06 55.1 50 64.0
Ciclev10017282m.g Citrus clementina HOM05D007756 ORTHO05D009403 3.0e-06 54.7 50 68.0
COL.COLO4_31554 Corchorus olitorius HOM05D007756 ORTHO05D009403 3.0e-06 54.7 57 56.1
Gohir.D06G128600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 3.9e-06 54.3 51 58.8
Hma1.2p1_0144F.1_g064980 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 3.9e-06 54.3 49 67.3
Lalb_Chr16g0383441 Lupinus albus HOM05D007756 ORTHO05D009403 3.9e-06 54.3 49 65.3
Glyma.08G057900 Glycine max HOM05D007756 ORTHO05D009403 5.1e-06 53.9 57 64.9
Gohir.A06G123802 Gossypium hirsutum HOM05D007756 ORTHO05D009403 5.1e-06 53.9 51 58.8
Gohir.D05G167000 Gossypium hirsutum HOM05D007756 ORTHO05D009403 5.1e-06 53.9 46 63.0
GSVIVG01005837001 Vitis vinifera HOM05D007756 ORTHO05D009403 5.1e-06 53.9 37 75.7
CiPaw.10G120500 Carya illinoinensis HOM05D007756 ORTHO05D009403 6.7e-06 53.5 52 55.8
MELO3C007318.2 Cucumis melo HOM05D007756 ORTHO05D009403 8.8e-06 53.1 51 60.8
Hma1.2p1_0144F.1_g064970 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 8.8e-06 53.1 49 67.3
Manes.16G022400 Manihot esculenta HOM05D007756 ORTHO05D009403 8.8e-06 53.1 51 64.7
Manes.17G040600 Manihot esculenta HOM05D007756 ORTHO05D009403 8.8e-06 53.1 50 66.0
Nn1g03943 Nelumbo nucifera HOM05D007756 ORTHO05D009403 8.8e-06 53.1 51 58.8


User provided reference genes

Program Settings