Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000372 Carpinus fangiana HOM05D007756 ORTHO05D009403 4.4e-26 120.6 62 100.0
Cfa000373 Carpinus fangiana HOM05D007756 ORTHO05D009403 2.3e-22 108.2 63 93.7
Prupe.4G039200 Prunus persica HOM05D007756 ORTHO05D009403 1.5e-10 68.9 51 74.5
CiPaw.09G159700 Carya illinoinensis HOM05D007756 ORTHO05D009403 3.4e-10 67.8 49 75.5
Prupe.4G039100 Prunus persica HOM05D007756 ORTHO05D009403 4.4e-10 67.4 61 65.6
Thecc.06G196200 Theobroma cacao HOM05D007756 ORTHO05D009403 4.4e-10 67.4 54 66.7
Gohir.A05G164200 Gossypium hirsutum HOM05D007756 ORTHO05D009403 7.5e-10 66.6 54 63.0
Gorai.009G172100 Gossypium raimondii HOM05D007756 ORTHO05D009403 7.5e-10 66.6 54 63.0
Nn1g06699 Nelumbo nucifera HOM05D007756 ORTHO05D009403 7.5e-10 66.6 60 63.3
Gohir.D10G020400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 9.8e-10 66.2 51 66.7
CiPaw.09G159600 Carya illinoinensis HOM05D007756 ORTHO05D009403 2.2e-09 65.1 49 73.5
Gohir.D10G020250 Gossypium hirsutum HOM05D007756 ORTHO05D009403 2.2e-09 65.1 51 64.7
Manes.16G038800 Manihot esculenta HOM05D007756 ORTHO05D009403 2.2e-09 65.1 51 72.5
RcHm_v2.0_Chr5g0006781 Rosa chinensis HOM05D007756 ORTHO05D009403 2.2e-09 65.1 60 61.7
CiPaw.10G120600 Carya illinoinensis HOM05D007756 ORTHO05D009403 4.9e-09 63.9 50 74.0
Gohir.D05G167100 Gossypium hirsutum HOM05D007756 ORTHO05D009403 4.9e-09 63.9 54 61.1
TAR679G0001 Trochodendron aralioides HOM05D007756 ORTHO05D009403 4.9e-09 63.9 50 68.0
Eucgr.E03374 Eucalyptus grandis HOM05D007756 ORTHO05D009403 8.3e-09 63.2 45 73.3
Gohir.A10G019600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 8.3e-09 63.2 50 64.0
RcHm_v2.0_Chr5g0006771 Rosa chinensis HOM05D007756 ORTHO05D009403 1.9e-08 62.0 60 60.0
Glyma.07G191400 Glycine max HOM05D007756 ORTHO05D009403 2.4e-08 61.6 65 64.6
MD10G1301200 Malus domestica HOM05D007756 ORTHO05D009403 2.4e-08 61.6 49 71.4
CiPaw.10G120500 Carya illinoinensis HOM05D007756 ORTHO05D009403 4.1e-08 60.8 53 62.3
Eucgr.E03372 Eucalyptus grandis HOM05D007756 ORTHO05D009403 4.1e-08 60.8 54 63.0
Gohir.A10G019400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 4.1e-08 60.8 51 60.8
Ciclev10017421m.g Citrus clementina HOM05D007756 ORTHO05D009403 5.4e-08 60.5 66 57.6
Eucgr.E03373 Eucalyptus grandis HOM05D007756 ORTHO05D009403 5.4e-08 60.5 50 68.0
Eucgr.E03371 Eucalyptus grandis HOM05D007756 ORTHO05D009403 7.1e-08 60.1 50 68.0
Hma1.2p1_0144F.1_g064980 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 9.2e-08 59.7 63 58.7
VMungo0251G2707 Vigna mungo HOM05D007756 ORTHO05D009403 1.2e-07 59.3 63 58.7
Glyma.08G057900 Glycine max HOM05D007756 ORTHO05D009403 1.6e-07 58.9 65 61.5
Gohir.A06G123802 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.6e-07 58.9 51 62.7
Ciclev10017282m.g Citrus clementina HOM05D007756 ORTHO05D009403 2.1e-07 58.5 55 65.5
Cfa000371 Carpinus fangiana HOM05D007756 ORTHO05D009403 2.7e-07 58.2 56 58.9
MD05G1323400 Malus domestica HOM05D007756 ORTHO05D009403 2.7e-07 58.2 45 71.1
Phvul.002G223500 Phaseolus vulgaris HOM05D007756 ORTHO05D009403 2.7e-07 58.2 63 57.1
Gohir.D06G128600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 3.5e-07 57.8 51 60.8
Potri.004G036375 Populus trichocarpa HOM05D007756 ORTHO05D009403 4.6e-07 57.4 55 56.4
Hma1.2p1_0144F.1_g064970 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 6.0e-07 57.0 53 66.0
Lalb_Chr16g0383441 Lupinus albus HOM05D007756 ORTHO05D009403 7.8e-07 56.6 49 67.3
GSVIVG01005837001 Vitis vinifera HOM05D007756 ORTHO05D009403 7.8e-07 56.6 37 78.4
Manes.17G040600 Manihot esculenta HOM05D007756 ORTHO05D009403 1.0e-06 56.2 50 68.0
MELO3C007317.2 Cucumis melo HOM05D007756 ORTHO05D009403 1.3e-06 55.8 51 58.8
Hma1.2p1_0144F.1_g064960 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 1.3e-06 55.8 62 56.5
Gohir.D05G167000 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.7e-06 55.5 54 61.1
Manes.16G022400 Manihot esculenta HOM05D007756 ORTHO05D009403 1.7e-06 55.5 60 61.7
Nn1g03943 Nelumbo nucifera HOM05D007756 ORTHO05D009403 1.7e-06 55.5 51 60.8
Oeu050838.1 Olea europaea HOM05D007756 ORTHO05D009403 2.3e-06 55.1 44 61.4
MELO3C007318.2 Cucumis melo HOM05D007756 ORTHO05D009403 5.1e-06 53.9 51 60.8
Potri.011G044800 Populus trichocarpa HOM05D007756 ORTHO05D009403 5.1e-06 53.9 48 66.7
Aqoxy1G02679 Aquilegia oxysepala HOM05D007756 ORTHO05D009403 8.6e-06 53.1 58 56.9
Potri.004G036350 Populus trichocarpa HOM05D007756 ORTHO05D009403 8.6e-06 53.1 58 58.6
Sed0004694 Sechium edule HOM05D007756 ORTHO05D009403 8.6e-06 53.1 51 56.9


User provided reference genes

Program Settings