Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000343 Carpinus fangiana HOM05D007836 ORTHO05D009876 3.5e-36 154.5 79 100.0
Haze_06588 Corylus avellana HOM05D007836 ORTHO05D009876 6.2e-33 143.7 79 91.1
QL05p081073 Quercus lobata HOM05D007836 ORTHO05D009876 6.9e-24 113.6 72 84.7
Potri.004G033300 Populus trichocarpa HOM05D007836 ORTHO05D009876 3.4e-23 111.3 88 70.5
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 4.9e-22 107.5 87 65.5
Sabra04G0019100 Salix brachista HOM05D007836 ORTHO05D009876 6.4e-22 107.1 88 68.2
CiPaw.10G117600 Carya illinoinensis HOM05D007836 ORTHO05D009876 1.1e-21 106.3 87 69.0
Ciclev10017323m.g Citrus clementina HOM05D007836 ORTHO05D009876 3.9e-19 97.8 89 62.9
Sabra11G0028600 Salix brachista HOM05D007836 ORTHO05D009876 5.1e-19 97.4 75 70.7
TWI38G1692 Tripterygium wilfordii HOM05D007836 ORTHO05D009876 1.9e-18 95.5 87 65.5
Ca_00250_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 3.3e-18 94.7 91 65.9
Ca_29769_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 3.3e-18 94.7 91 65.9
Ca_29839_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 3.3e-18 94.7 91 65.9
Medtr2g011690 Medicago truncatula HOM05D007836 ORTHO05D009876 5.6e-18 94.0 91 60.4
Psat1g208960 Pisum sativum HOM05D007836 ORTHO05D009876 5.6e-18 94.0 91 62.6
TPR.G36842 Trifolium pratense HOM05D007836 ORTHO05D009876 7.3e-18 93.6 89 61.8
Potri.011G041700 Populus trichocarpa HOM05D007836 ORTHO05D009876 9.6e-18 93.2 75 68.0
Thecc.06G201100 Theobroma cacao HOM05D007836 ORTHO05D009876 2.1e-17 92.0 91 57.1
TAR629G2038 Trochodendron aralioides HOM05D007836 ORTHO05D009876 3.6e-17 91.3 81 61.7
Hma1.2p1_1182F.1_g264760 Hydrangea macrophylla HOM05D007836 ORTHO05D009876 6.2e-17 90.5 75 69.3
QL05p081076 Quercus lobata HOM05D007836 ORTHO05D009876 3.1e-16 88.2 64 79.7
Nn1g03860 Nelumbo nucifera HOM05D007836 ORTHO05D009876 5.3e-16 87.4 87 59.8
Nn1g03862 Nelumbo nucifera HOM05D007836 ORTHO05D009876 5.3e-16 87.4 87 59.8
Nitab4.5_0000649g0060 Nicotiana tabacum HOM05D007836 ORTHO05D009876 2.6e-15 85.1 73 64.4
Lalb_Chr20g0122321 Lupinus albus HOM05D007836 ORTHO05D009876 4.5e-15 84.3 82 59.8
Rhsim02G0119100 Rhododendron simsii HOM05D007836 ORTHO05D009876 4.5e-15 84.3 77 59.7
Migut.M01222 Erythranthe guttata HOM05D007836 ORTHO05D009876 1.3e-14 82.8 73 63.0
Atru.chr10.2022 Acer truncatum HOM05D007836 ORTHO05D009876 2.9e-14 81.6 81 58.0
Ciclev10018116m.g Citrus clementina HOM05D007836 ORTHO05D009876 2.9e-14 81.6 82 57.3
Manes.16G019800 Manihot esculenta HOM05D007836 ORTHO05D009876 1.4e-13 79.3 89 60.7
Glyma.13G247000 Glycine max HOM05D007836 ORTHO05D009876 9.3e-13 76.6 92 56.5
MBI18_g27690_MAGBIO Magnolia biondii HOM05D007836 ORTHO05D009876 1.6e-12 75.9 91 56.0
Prupe.4G035300 Prunus persica HOM05D007836 ORTHO05D009876 1.6e-12 75.9 72 56.9
Potri.019G117800 Populus trichocarpa HOM05D007836 ORTHO05D009876 2.1e-12 75.5 75 58.7
QL08p037020 Quercus lobata HOM05D007836 ORTHO05D009876 2.1e-12 75.5 91 52.7
Nitab4.5_0005389g0040 Nicotiana tabacum HOM05D007836 ORTHO05D009876 3.5e-12 74.7 73 58.9
TAR627G0603 Trochodendron aralioides HOM05D007836 ORTHO05D009876 3.5e-12 74.7 75 54.7
Gohir.A10G021700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 7.9e-12 73.6 90 50.0
CiPaw.03G168400 Carya illinoinensis HOM05D007836 ORTHO05D009876 1.0e-11 73.2 85 48.2
Atru.chr6.3083 Acer truncatum HOM05D007836 ORTHO05D009876 1.3e-11 72.8 90 51.1
Gorai.011G023600 Gossypium raimondii HOM05D007836 ORTHO05D009876 1.3e-11 72.8 92 48.9
FAN11G3258 Fragaria x ananassa HOM05D007836 ORTHO05D009876 1.8e-11 72.4 97 55.7
Gohir.A06G209201 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.8e-11 72.4 70 61.4
PGR004G0674 Punica granatum HOM05D007836 ORTHO05D009876 1.8e-11 72.4 72 54.2
Gohir.D10G022500 Gossypium hirsutum HOM05D007836 ORTHO05D009876 5.1e-11 70.9 97 46.4
Gohir.D06G127700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 8.7e-11 70.1 67 58.2
Gorai.010G149400 Gossypium raimondii HOM05D007836 ORTHO05D009876 8.7e-11 70.1 67 58.2
Cfa014529 Carpinus fangiana HOM05D007836 ORTHO05D009876 1.1e-10 69.7 98 49.0
Phvul.006G192700 Phaseolus vulgaris HOM05D007836 ORTHO05D009876 1.5e-10 69.3 73 56.2
Sabra19G0118200 Salix brachista HOM05D007836 ORTHO05D009876 1.9e-10 68.9 75 54.7
Solyc02g079240.1 Solanum lycopersicum HOM05D007836 ORTHO05D009876 1.9e-10 68.9 79 53.2
FAN21G2853 Fragaria x ananassa HOM05D007836 ORTHO05D009876 3.3e-10 68.2 73 58.9
Aqoxy1G03904 Aquilegia oxysepala HOM05D007836 ORTHO05D009876 1.3e-09 66.2 90 50.0
CAN.G424.25 Capsicum annuum HOM05D007836 ORTHO05D009876 1.3e-09 66.2 77 48.1
COL.COLO4_13657 Corchorus olitorius HOM05D007836 ORTHO05D009876 1.3e-09 66.2 76 50.0
Thecc.02G170500 Theobroma cacao HOM05D007836 ORTHO05D009876 2.1e-09 65.5 91 48.4
Manes.13G152300 Manihot esculenta HOM05D007836 ORTHO05D009876 2.8e-09 65.1 89 46.1
Sopen02g024060 Solanum pennellii HOM05D007836 ORTHO05D009876 3.7e-09 64.7 83 48.2
FvH4_3g03810 Fragaria vesca HOM05D007836 ORTHO05D009876 1.8e-08 62.4 98 50.0
FAN16G2096 Fragaria x ananassa HOM05D007836 ORTHO05D009876 1.8e-08 62.4 98 50.0
Sed0016301 Sechium edule HOM05D007836 ORTHO05D009876 2.4e-08 62.0 67 55.2
Eucgr.L02510 Eucalyptus grandis HOM05D007836 ORTHO05D009876 3.1e-08 61.6 86 51.2
SHI24864 Sapria himalayana HOM05D007836 ORTHO05D009876 3.1e-08 61.6 81 49.4
Eucgr.E03690 Eucalyptus grandis HOM05D038013 ORTHO05D009876 6.9e-08 60.5 76 55.3
Eucgr.E03810 Eucalyptus grandis HOM05D038013 ORTHO05D009876 1.2e-07 59.7 76 53.9
Eucgr.L02509 Eucalyptus grandis HOM05D007836 ORTHO05D009876 1.2e-07 59.7 86 50.0
CARHR032800 Cardamine hirsuta HOM05D000831 ORTHO05D000660 1.5e-07 59.3 77 48.1
Migut.H01523 Erythranthe guttata HOM05D007836 ORTHO05D009876 1.5e-07 59.3 78 50.0
ClCG01G022480 Citrullus lanatus HOM05D007836 ORTHO05D009876 2.6e-07 58.5 77 46.8
THA.LOC104812666 Tarenaya hassleriana HOM05D010797 ORTHO05D012946 3.4e-07 58.2 86 41.9
Cpa.g.sc12.26 Carica papaya HOM05D000831 ORTHO05D000660 4.5e-07 57.8 76 47.4
Potri.013G148300 Populus trichocarpa HOM05D007836 ORTHO05D009876 4.5e-07 57.8 76 48.7
Actinidia11813 Actinidia chinensis HOM05D007380 ORTHO05D009269 9.9e-07 56.6 61 60.7
Ah.06g183460 Amaranthus hybridus HOM05D000831 ORTHO05D000660 9.9e-07 56.6 73 45.2
Eucgr.E03817 Eucalyptus grandis HOM05D038013 ORTHO05D009876 9.9e-07 56.6 82 48.8
Cc05_g06160 Coffea canephora HOM05D000831 ORTHO05D000660 1.3e-06 56.2 73 43.8
Gohir.D13G064750 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.3e-06 56.2 69 47.8
Gorai.013G073500 Gossypium raimondii HOM05D007836 ORTHO05D009876 1.3e-06 56.2 69 47.8
AL6G44110 Arabidopsis lyrata HOM05D000831 ORTHO05D000660 1.7e-06 55.8 76 44.7
CARHR256510 Cardamine hirsuta HOM05D000831 ORTHO05D000660 1.7e-06 55.8 77 44.2
Cpa.g.sc12.27 Carica papaya HOM05D000831 ORTHO05D000660 1.7e-06 55.8 76 46.1
Cc05_g06120 Coffea canephora HOM05D000831 ORTHO05D000660 1.7e-06 55.8 73 45.2
Gohir.A13G057150 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.7e-06 55.8 69 47.8
Aa31LG9G11730 Aethionema arabicum HOM05D000831 ORTHO05D000660 2.2e-06 55.5 76 47.4
Ah.06g183450 Amaranthus hybridus HOM05D000831 ORTHO05D000660 2.2e-06 55.5 73 43.8
Cc00_g31440 Coffea canephora HOM05D000831 ORTHO05D000660 3.8e-06 54.7 46 58.7
MELO3C018771.2 Cucumis melo HOM05D024319 ORTHO05D025083 3.8e-06 54.7 49 57.1
Glyma.12G200700 Glycine max HOM05D000831 ORTHO05D000660 3.8e-06 54.7 75 49.3
Gorai.010G254100 Gossypium raimondii HOM05D007836 ORTHO05D009876 3.8e-06 54.7 72 48.6
Manes.12G082200 Manihot esculenta HOM05D007836 ORTHO05D009876 3.8e-06 54.7 71 50.7
RcHm_v2.0_Chr2g0161461 Rosa chinensis HOM05D000831 ORTHO05D000660 3.8e-06 54.7 74 41.9
Gohir.D06G211966 Gossypium hirsutum HOM05D007836 ORTHO05D009876 4.9e-06 54.3 73 47.9
Sed0004298 Sechium edule HOM05D024319 ORTHO05D025083 4.9e-06 54.3 76 47.4
BcaB07g32973 Brassica carinata HOM05D000831 ORTHO05D000660 6.4e-06 53.9 45 57.8
Cpa.g.sc12.25 Carica papaya HOM05D000831 ORTHO05D000660 8.4e-06 53.5 44 59.1
Cfa014533 Carpinus fangiana HOM05D000831 ORTHO05D000660 8.4e-06 53.5 75 42.7
Cfa014535 Carpinus fangiana HOM05D000831 ORTHO05D000660 8.4e-06 53.5 75 42.7
Cfa014536 Carpinus fangiana HOM05D000831 ORTHO05D000660 8.4e-06 53.5 75 42.7


User provided reference genes

Program Settings