Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000291 Carpinus fangiana HOM05D000891 ORTHO05D000761 6.4e-83 311.2 227 100.0
Cfa000285 Carpinus fangiana HOM05D000891 ORTHO05D000761 3.7e-46 189.1 93 97.8
Haze_06653 Corylus avellana HOM05D000891 ORTHO05D000761 1.3e-38 164.1 86 93.0
CiPaw.16G021100 Carya illinoinensis HOM05D000891 ORTHO05D000761 3.2e-34 149.4 91 78.0
Haze_06643 Corylus avellana HOM05D000891 ORTHO05D000761 3.0e-32 142.9 77 92.2
FAN21G3318 Fragaria x ananassa HOM05D000891 ORTHO05D000761 4.1e-29 132.5 205 37.6
Cfa000288 Carpinus fangiana HOM05D000891 ORTHO05D027360 2.7e-28 129.8 93 71.0
VMungo0251G3555 Vigna mungo HOM05D000891 ORTHO05D000761 1.7e-22 110.5 93 54.8
AUR62044184 Chenopodium quinoa HOM05D000891 ORTHO05D000761 3.8e-19 99.4 204 31.9
Ciclev10015628m.g Citrus clementina HOM05D000891 ORTHO05D000761 3.8e-19 99.4 93 52.7
Haze_06642 Corylus avellana HOM05D000891 ORTHO05D000761 8.6e-19 98.2 65 78.5
FvH4_3g03080 Fragaria vesca HOM05D000891 ORTHO05D000761 1.1e-18 97.8 207 33.3
Atru.chr10.2083 Acer truncatum HOM05D000891 ORTHO05D000761 1.9e-18 97.1 93 50.5
Dinv17858 Davidia involucrata HOM05D000891 ORTHO05D000761 1.2e-17 94.4 91 52.7
FvH4_3g03070 Fragaria vesca HOM05D000891 ORTHO05D000761 1.6e-17 94.0 81 56.8
TWI38G1234 Tripterygium wilfordii HOM05D000891 ORTHO05D000761 6.1e-17 92.0 79 57.0
Cfa000289 Carpinus fangiana HOM05D000891 ORTHO05D000761 1.4e-16 90.9 60 81.7
Phvul.002G219400 Phaseolus vulgaris HOM05D000891 ORTHO05D000761 1.4e-16 90.9 80 52.5
Lalb_Chr09g0327201 Lupinus albus HOM05D000891 ORTHO05D000761 6.8e-16 88.6 70 58.6
Manes.16G016000 Manihot esculenta HOM05D000891 ORTHO05D000761 1.2e-15 87.8 81 56.8
AUR62012561 Chenopodium quinoa HOM05D000891 ORTHO05D000761 1.5e-15 87.4 204 43.6
Thecc.06G206400 Theobroma cacao HOM05D000891 ORTHO05D000761 2.0e-15 87.0 71 59.2
Cfa000286 Carpinus fangiana HOM05D000891 ORTHO05D000761 3.4e-15 86.3 62 72.6
Lj2P276T41 Lonicera japonica HOM05D000891 ORTHO05D000761 9.8e-15 84.7 93 43.0
CiPaw.10G113500 Carya illinoinensis HOM05D000891 ORTHO05D000761 1.7e-14 84.0 60 70.0
Duzib235G0069 Durio zibethinus HOM05D000891 ORTHO05D000761 3.7e-14 82.8 71 53.5
FAN25G2188 Fragaria x ananassa HOM05D000891 ORTHO05D000761 3.7e-14 82.8 70 57.1
Rhsim13G0163200 Rhododendron simsii HOM05D000891 ORTHO05D000761 3.7e-14 82.8 68 55.9
Glyma.08G061500 Glycine max HOM05D000891 ORTHO05D000761 8.3e-14 81.6 74 50.0
Lj6g0017835 Lotus japonicus HOM05D000891 ORTHO05D000761 8.3e-14 81.6 204 40.2
FvH4_3g03160 Fragaria vesca HOM05D000891 ORTHO05D000761 1.1e-13 81.3 70 57.1
Lalb_Chr05g0218021 Lupinus albus HOM05D000891 ORTHO05D000761 1.4e-13 80.9 80 51.2
Ca_18462_v3 Cicer arietinum L. HOM05D000891 ORTHO05D000761 1.8e-13 80.5 75 53.3
Ca_29634_v3 Cicer arietinum L. HOM05D000891 ORTHO05D000761 1.8e-13 80.5 75 53.3
Eucgr.E03611 Eucalyptus grandis HOM05D000891 ORTHO05D000761 2.4e-13 80.1 70 55.7
BcaB04g18745 Brassica carinata HOM05D000891 ORTHO05D000761 3.2e-13 79.7 93 39.8
HanXRQChr15g0482791 Helianthus annuus HOM05D000891 ORTHO05D000761 3.2e-13 79.7 91 41.8
Sabra04G0016900 Salix brachista HOM05D000891 ORTHO05D000761 3.2e-13 79.7 91 42.9
RcHm_v2.0_Chr5g0004781 Rosa chinensis HOM05D000891 ORTHO05D000761 5.4e-13 79.0 69 59.4
Actinidia26964 Actinidia chinensis HOM05D000891 ORTHO05D000761 7.0e-13 78.6 89 46.1
Sabra04G0017000 Salix brachista HOM05D000891 ORTHO05D000761 9.2e-13 78.2 77 46.8
ECA236G1633 Erigeron canadensis HOM05D000891 ORTHO05D000761 1.2e-12 77.8 206 40.3
Potri.004G030000 Populus trichocarpa HOM05D000891 ORTHO05D000761 1.2e-12 77.8 73 49.3
Solyc02g079820.4 Solanum lycopersicum HOM05D000891 ORTHO05D000761 1.2e-12 77.8 201 24.9
Lj4g0025468 Lotus japonicus HOM05D000891 ORTHO05D000761 1.6e-12 77.4 71 52.1
AUR62014630 Chenopodium quinoa HOM05D000891 ORTHO05D000761 2.7e-12 76.6 203 36.5
Gohir.A06G121700 Gossypium hirsutum HOM05D000891 ORTHO05D000761 3.5e-12 76.3 203 41.4
Cfa000287 Carpinus fangiana HOM05D000891 ORTHO05D000761 5.9e-12 75.5 54 72.2
AUR62012568 Chenopodium quinoa HOM05D000891 ORTHO05D000761 7.8e-12 75.1 59 61.0
arahy.Tifrunner.gnm1.ann1.2DT13A Arachis hypogaea HOM05D000891 ORTHO05D000761 1.0e-11 74.7 86 47.7
Sabra11G0025400 Salix brachista HOM05D000891 ORTHO05D000761 1.3e-11 74.3 65 52.3
Nitab4.5_0002544g0070 Nicotiana tabacum HOM05D000891 ORTHO05D036868 6.6e-11 72.0 191 47.6
Gohir.D06G125900 Gossypium hirsutum HOM05D000891 ORTHO05D000761 1.5e-10 70.9 57 61.4
Gorai.010G146600 Gossypium raimondii HOM05D000891 ORTHO05D000761 1.5e-10 70.9 57 61.4
Nitab4.5_0001586g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 3.3e-10 69.7 94 36.2
BcaC01g04016 Brassica carinata HOM05D000891 ORTHO05D000761 5.6e-10 68.9 70 45.7
BolC3t16891H Brassica oleracea HOM05D000891 ORTHO05D000761 5.6e-10 68.9 70 45.7
Sabra11G0019500 Salix brachista HOM05D000891 ORTHO05D000761 5.6e-10 68.9 63 50.8
THA.LOC104810572 Tarenaya hassleriana HOM05D000891 ORTHO05D000761 5.6e-10 68.9 69 49.3
VMungo0251G0538 Vigna mungo HOM05D000891 ORTHO05D000761 7.3e-10 68.6 199 34.7
C06p16280 Brassica napus HOM05D000891 ORTHO05D000761 1.2e-09 67.8 93 34.4
MELO3C007346.2 Cucumis melo HOM05D000891 ORTHO05D000761 1.2e-09 67.8 202 56.4
Prupe.4G030500 Prunus persica HOM05D000891 ORTHO05D000761 1.6e-09 67.4 57 61.4
MELO3C007342.2 Cucumis melo HOM05D000891 ORTHO05D000761 2.1e-09 67.0 202 56.4
Lsat_1_v5_gn_4_58301 Lactuca sativa HOM05D000891 ORTHO05D000761 2.1e-09 67.0 201 56.7
Nitab4.5_0000425g0250 Nicotiana tabacum HOM05D000891 ORTHO05D000761 2.1e-09 67.0 173 40.5
EL10As6g23669 Beta vulgaris HOM05D000891 ORTHO05D000761 2.8e-09 66.6 68 48.5
DCAR_004172 Daucus carota HOM05D000891 ORTHO05D000761 2.8e-09 66.6 72 44.4
Aqoxy4G01894 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 3.6e-09 66.2 78 43.6
Lalb_Chr18g0060101 Lupinus albus HOM05D000891 ORTHO05D000761 3.6e-09 66.2 73 49.3
Aa31LG10G290 Aethionema arabicum HOM05D000891 ORTHO05D000761 4.7e-09 65.9 72 45.8
Nn1g03756 Nelumbo nucifera HOM05D000891 ORTHO05D000761 4.7e-09 65.9 63 58.7
BcaC05g29206 Brassica carinata HOM05D049981 ORTHO05D027360 6.2e-09 65.5 78 38.5
C05p54790 Brassica napus HOM05D049981 ORTHO05D027360 6.2e-09 65.5 78 38.5
Ah.14g088530 Amaranthus hybridus HOM05D000891 ORTHO05D000761 1.0e-08 64.7 74 39.2
Aqoxy4G01892 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 1.4e-08 64.3 201 57.7
BcaB06g25483 Brassica carinata HOM05D000891 ORTHO05D027360 1.4e-08 64.3 79 40.5
Peaxi162Scf00781g00021 Petunia axillaris HOM05D000891 ORTHO05D000761 1.8e-08 63.9 59 55.9
Potri.011G032400 Populus trichocarpa HOM05D000891 ORTHO05D000761 1.8e-08 63.9 68 47.1
Aa31LG8G360 Aethionema arabicum HOM05D000891 ORTHO05D000761 2.3e-08 63.5 68 42.6
Sabra11G0025600 Salix brachista HOM05D000891 ORTHO05D000761 2.3e-08 63.5 77 44.2
Sed0024534 Sechium edule HOM05D000891 ORTHO05D000761 2.3e-08 63.5 77 40.3
CsaV3_6G049490 Cucumis sativus L. HOM05D000891 ORTHO05D000761 3.1e-08 63.2 202 55.4
Nitab4.5_0002544g0030 Nicotiana tabacum HOM05D000891 ORTHO05D000761 3.1e-08 63.2 74 43.2
Glyma.07G187800 Glycine max HOM05D000891 ORTHO05D000761 6.8e-08 62.0 59 50.8
TWI38G1619 Tripterygium wilfordii HOM05D000891 ORTHO05D000761 6.8e-08 62.0 72 50.0
ATR0322G078 Amborella trichopoda HOM05D000891 ORTHO05D000761 8.9e-08 61.6 191 20.9
AL3G24900 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 8.9e-08 61.6 67 46.3
COL.COLO4_31671 Corchorus olitorius HOM05D000891 ORTHO05D000761 8.9e-08 61.6 58 55.2
A03p38070 Brassica napus HOM05D000891 ORTHO05D000761 1.2e-07 61.2 62 48.4
BraA03t12960Z Brassica rapa HOM05D000891 ORTHO05D000761 1.2e-07 61.2 62 48.4
CDE12G0214 Ceratophyllum demersum HOM05D000891 ORTHO05D000761 1.2e-07 61.2 48 56.2
Manes.17G030600 Manihot esculenta HOM05D000891 ORTHO05D000761 1.2e-07 61.2 58 50.0
PGR042G0713 Punica granatum HOM05D000891 ORTHO05D000761 1.2e-07 61.2 58 56.9
TWI38G0473 Tripterygium wilfordii HOM05D000891 ORTHO05D000761 1.2e-07 61.2 70 44.3
Cfa000283 Carpinus fangiana HOM05D000891 ORTHO05D000761 1.5e-07 60.8 60 45.0
AUR62012566 Chenopodium quinoa HOM05D000891 ORTHO05D000761 1.5e-07 60.8 69 49.3
MD05G1334700 Malus domestica HOM05D000891 ORTHO05D000761 1.5e-07 60.8 55 54.5
Nitab4.5_0005140g0030 Nicotiana tabacum HOM05D000891 ORTHO05D000761 1.5e-07 60.8 59 52.5
TAR626G0803 Trochodendron aralioides HOM05D000891 ORTHO05D000761 1.5e-07 60.8 58 55.2
BcaC08g44226 Brassica carinata HOM05D000891 ORTHO05D000761 2.0e-07 60.5 78 35.9
BolC6t36828H Brassica oleracea HOM05D000891 ORTHO05D000761 2.0e-07 60.5 78 35.9
FvH4_3g03043 Fragaria vesca HOM05D000891 ORTHO05D045691 2.0e-07 60.5 51 54.9
Potri.011G032500 Populus trichocarpa HOM05D000891 ORTHO05D000761 2.0e-07 60.5 70 42.9
Haze_06658 Corylus avellana HOM05D000891 ORTHO05D000761 2.6e-07 60.1 60 43.3
Nitab4.5_0000900g0170 Nicotiana tabacum HOM05D000891 ORTHO05D000761 2.6e-07 60.1 59 52.5
VMungo0251G3430 Vigna mungo HOM05D007339 ORTHO05D026123 2.6e-07 60.1 65 43.1
A05p17250 Brassica napus HOM05D000891 ORTHO05D000761 3.4e-07 59.7 76 36.8
BraA01t04074Z Brassica rapa HOM05D000891 ORTHO05D000761 3.4e-07 59.7 59 49.2
FvH4_3g03090 Fragaria vesca HOM05D000891 ORTHO05D000761 3.4e-07 59.7 147 27.2
vmacro03743 Vaccinium macrocarpon HOM05D000891 ORTHO05D000761 3.4e-07 59.7 63 47.6
AUR62014635 Chenopodium quinoa HOM05D000891 ORTHO05D000761 4.4e-07 59.3 65 50.8
HanXRQChr05g0130841 Helianthus annuus HOM05D000891 ORTHO05D000761 4.4e-07 59.3 71 42.3
PGSC0003DMG400005048 Solanum tuberosum HOM05D000891 ORTHO05D000761 4.4e-07 59.3 59 52.5
VMungo0251G1977 Vigna mungo HOM05D000891 ORTHO05D000761 4.4e-07 59.3 67 44.8
C01p51930 Brassica napus HOM05D000891 ORTHO05D000761 5.8e-07 58.9 59 49.2
BolC1t05140H Brassica oleracea HOM05D000891 ORTHO05D000761 5.8e-07 58.9 59 49.2
TPR.G13909 Trifolium pratense HOM05D000891 ORTHO05D000761 5.8e-07 58.9 63 46.0
EL10As6g23660 Beta vulgaris HOM05D000022 ORTHO05D000071 7.5e-07 58.5 96 36.5
FAN21G1183 Fragaria x ananassa HOM05D000891 ORTHO05D045691 7.5e-07 58.5 52 46.2
TAR627G1176 Trochodendron aralioides HOM05D000891 ORTHO05D000761 9.8e-07 58.2 49 59.2
BcaB02g10792 Brassica carinata HOM05D000891 ORTHO05D000761 1.3e-06 57.8 73 37.0
Psat7g107640 Pisum sativum HOM05D000891 ORTHO05D000761 1.3e-06 57.8 57 50.9
Sc03g0001890 Simmondsia chinensis HOM05D000891 ORTHO05D000761 1.3e-06 57.8 60 55.0
Actinidia05549 Actinidia chinensis HOM05D000891 ORTHO05D000761 1.7e-06 57.4 58 50.0
A01p40390 Brassica napus HOM05D000891 ORTHO05D000761 1.7e-06 57.4 59 49.2
Dinv18956 Davidia involucrata HOM05D000891 ORTHO05D000761 2.2e-06 57.0 55 47.3
BraA05t20624Z Brassica rapa HOM05D000891 ORTHO05D000761 3.7e-06 56.2 71 38.0
Nitab4.5_0002902g0150 Nicotiana tabacum HOM05D000891 ORTHO05D000761 4.9e-06 55.8 45 55.6
Rhsim13G0163100 Rhododendron simsii HOM05D000891 ORTHO05D000761 4.9e-06 55.8 43 65.1
PGSC0003DMG400021711 Solanum tuberosum HOM05D000891 ORTHO05D000761 4.9e-06 55.8 73 35.6
arahy.Tifrunner.gnm1.ann1.72G1G0 Arachis hypogaea HOM05D000891 ORTHO05D000761 6.4e-06 55.5 81 38.3
Eucgr.D00875 Eucalyptus grandis HOM05D000891 ORTHO05D000761 6.4e-06 55.5 90 35.6
Nitab4.5_0001586g0030 Nicotiana tabacum HOM05D000891 ORTHO05D000761 6.4e-06 55.5 65 46.2
QL05p077802 Quercus lobata HOM05D000891 ORTHO05D000761 8.3e-06 55.1 46 63.0


User provided reference genes

Program Settings