Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000284 Carpinus fangiana HOM05D000022 ORTHO05D019438 2.9e-28 127.9 66 100.0
Cfa000290 Carpinus fangiana HOM05D000022 ORTHO05D005575 5.5e-27 123.6 66 97.0
Haze_06644 Corylus avellana HOM05D000022 ORTHO05D000071 4.7e-18 94.0 55 87.3
Haze_06654 Corylus avellana HOM05D000022 ORTHO05D000071 2.0e-13 78.6 59 76.3
CiPaw.04G137500 Carya illinoinensis HOM05D000022 ORTHO05D000071 9.5e-11 69.7 72 54.2
CiPaw.09G082200 Carya illinoinensis HOM05D000022 ORTHO05D000071 9.5e-11 69.7 72 55.6
QL05p024581 Quercus lobata HOM05D000022 ORTHO05D000071 9.5e-11 69.7 69 55.1
Haze_06719 Corylus avellana HOM05D000022 ORTHO05D000071 1.2e-10 69.3 70 58.6
Haze_06712 Corylus avellana HOM05D000022 ORTHO05D000071 6.1e-10 67.0 68 57.4
GSVIVG01006742001 Vitis vinifera HOM05D000022 ORTHO05D005575 6.1e-10 67.0 66 54.5
TAR629G1303 Trochodendron aralioides HOM05D000022 ORTHO05D000071 8.0e-10 66.6 67 58.2
FvH4_3g02820 Fragaria vesca HOM05D000022 ORTHO05D000071 1.4e-09 65.9 66 53.0
QL09p026146 Quercus lobata HOM05D000022 ORTHO05D000071 1.4e-09 65.9 69 52.2
QL11p008909 Quercus lobata HOM05D000022 ORTHO05D000071 1.4e-09 65.9 69 56.5
QL09p026199 Quercus lobata HOM05D000022 ORTHO05D000071 1.8e-09 65.5 69 56.5
RcHm_v2.0_Chr5g0004241 Rosa chinensis HOM05D000022 ORTHO05D000071 3.1e-09 64.7 66 51.5
Thecc.06G210100 Theobroma cacao HOM05D000022 ORTHO05D000071 3.1e-09 64.7 70 54.3
TAR629G1705 Trochodendron aralioides HOM05D000022 ORTHO05D000071 3.1e-09 64.7 66 57.6
Haze_06708 Corylus avellana HOM05D000022 ORTHO05D000071 5.2e-09 63.9 71 56.3
FvH4_3g02773 Fragaria vesca HOM05D000022 ORTHO05D000071 5.2e-09 63.9 66 51.5
RcHm_v2.0_Chr5g0004371 Rosa chinensis HOM05D000022 ORTHO05D000071 5.2e-09 63.9 71 52.1
Thecc.06G210400 Theobroma cacao HOM05D000022 ORTHO05D000071 5.2e-09 63.9 70 54.3
CiPaw.09G081200 Carya illinoinensis HOM05D000022 ORTHO05D000071 6.8e-09 63.5 72 54.2
Haze_06721 Corylus avellana HOM05D000022 ORTHO05D000071 6.8e-09 63.5 66 54.5
MD00G1101900 Malus domestica HOM05D000022 ORTHO05D000071 6.8e-09 63.5 66 48.5
Lj5g0023366 Lotus japonicus HOM05D000022 ORTHO05D000071 1.5e-08 62.4 66 53.0
Haze_06701 Corylus avellana HOM05D000022 ORTHO05D000071 2.6e-08 61.6 67 58.2
Phvul.002G049450 Phaseolus vulgaris HOM05D000022 ORTHO05D000071 2.6e-08 61.6 66 53.0
QL05p076602 Quercus lobata HOM05D000022 ORTHO05D000071 2.6e-08 61.6 65 53.8
GSVIVG01004598001 Vitis vinifera HOM05D000022 ORTHO05D000071 2.6e-08 61.6 70 48.6
GSVIVG01005168001 Vitis vinifera HOM05D000022 ORTHO05D000071 2.6e-08 61.6 70 48.6
Duzib192G0311 Durio zibethinus HOM05D000022 ORTHO05D000071 3.4e-08 61.2 70 52.9
Eucgr.E03054 Eucalyptus grandis HOM05D000022 ORTHO05D000071 3.4e-08 61.2 70 50.0
Eucgr.E03582 Eucalyptus grandis HOM05D000022 ORTHO05D000071 3.4e-08 61.2 70 48.6
Glyma.01G241000 Glycine max HOM05D000022 ORTHO05D000071 3.4e-08 61.2 66 51.5
Phvul.002G049500 Phaseolus vulgaris HOM05D000022 ORTHO05D000071 3.4e-08 61.2 66 51.5
QL12p029661 Quercus lobata HOM05D000022 ORTHO05D000071 3.4e-08 61.2 66 51.5
QL10p044882 Quercus lobata HOM05D000022 ORTHO05D000071 4.4e-08 60.8 69 53.6
Actinidia04779 Actinidia chinensis HOM05D000022 ORTHO05D019438 5.8e-08 60.5 70 48.6
Eucgr.E03589 Eucalyptus grandis HOM05D000022 ORTHO05D000071 5.8e-08 60.5 70 50.0
Prupe.4G027800 Prunus persica HOM05D000022 ORTHO05D000071 5.8e-08 60.5 66 51.5
Prupe.4G028800 Prunus persica HOM05D000022 ORTHO05D000071 5.8e-08 60.5 74 52.7
Eucgr.E03056 Eucalyptus grandis HOM05D000022 ORTHO05D000071 7.5e-08 60.1 70 50.0
Eucgr.L02458 Eucalyptus grandis HOM05D000022 ORTHO05D000071 7.5e-08 60.1 70 48.6
Oeu050796.1 Olea europaea HOM05D000022 ORTHO05D000071 7.5e-08 60.1 74 51.4
ECA234G1512 Erigeron canadensis HOM05D000022 ORTHO05D000071 9.8e-08 59.7 77 50.6
Eucgr.E03049 Eucalyptus grandis HOM05D000022 ORTHO05D000071 9.8e-08 59.7 70 48.6
Eucgr.E03576 Eucalyptus grandis HOM05D000022 ORTHO05D000071 9.8e-08 59.7 70 48.6
QL10p045104 Quercus lobata HOM05D000022 ORTHO05D000071 9.8e-08 59.7 69 52.2
QL10p046144 Quercus lobata HOM05D000022 ORTHO05D000071 9.8e-08 59.7 69 52.2
Haze_06704 Corylus avellana HOM05D000022 ORTHO05D000071 1.3e-07 59.3 58 60.3
Duzib192G0609 Durio zibethinus HOM05D000022 ORTHO05D000071 1.3e-07 59.3 70 52.9
QL05p076474 Quercus lobata HOM05D000022 ORTHO05D000071 1.3e-07 59.3 65 49.2
QL10p045725 Quercus lobata HOM05D000022 ORTHO05D000071 1.3e-07 59.3 69 52.2
CsaV3_6G049360 Cucumis sativus L. HOM05D000022 ORTHO05D000071 1.7e-07 58.9 66 50.0
Eucgr.E03045 Eucalyptus grandis HOM05D000022 ORTHO05D000071 1.7e-07 58.9 70 48.6
Lsat_1_v5_gn_4_57601 Lactuca sativa HOM05D000022 ORTHO05D000071 1.7e-07 58.9 78 48.7
MD05G1336800 Malus domestica HOM05D000022 ORTHO05D000071 1.7e-07 58.9 73 49.3
QL10p045782 Quercus lobata HOM05D000022 ORTHO05D000071 1.7e-07 58.9 69 49.3
VMungo1215G1771 Vigna mungo HOM05D000022 ORTHO05D000071 1.7e-07 58.9 66 50.0
Cpa.g.sc81.15 Carica papaya HOM05D000022 ORTHO05D000071 2.2e-07 58.5 66 50.0
Ciclev10011354m.g Citrus clementina HOM05D000022 ORTHO05D000071 2.2e-07 58.5 68 51.5
Duzib160G0050 Durio zibethinus HOM05D000022 ORTHO05D000071 2.2e-07 58.5 71 53.5
GSVIVG01005158001 Vitis vinifera HOM05D000022 ORTHO05D000071 2.2e-07 58.5 68 52.9
CAN.G569.49 Capsicum annuum HOM05D000022 ORTHO05D000071 2.9e-07 58.2 69 50.7
ECA234G2801 Erigeron canadensis HOM05D000022 ORTHO05D000071 2.9e-07 58.2 77 48.1
QL93p0073_1018 Quercus lobata HOM05D000022 ORTHO05D000071 2.9e-07 58.2 65 52.3
Thecc.06G209900 Theobroma cacao HOM05D000022 ORTHO05D000071 2.9e-07 58.2 70 51.4
Cpa.g.sc81.18 Carica papaya HOM05D000022 ORTHO05D000071 3.7e-07 57.8 66 53.0
Gohir.D06G125500 Gossypium hirsutum HOM05D000022 ORTHO05D000071 3.7e-07 57.8 66 47.0
Lj1g0007121 Lotus japonicus HOM05D000022 ORTHO05D000071 3.7e-07 57.8 66 50.0
Prupe.4G027700 Prunus persica HOM05D000022 ORTHO05D000071 3.7e-07 57.8 66 51.5
PGR042G1638 Punica granatum HOM05D000022 ORTHO05D000071 3.7e-07 57.8 72 51.4
QL10p045585 Quercus lobata HOM05D000022 ORTHO05D000071 3.7e-07 57.8 69 50.7
arahy.Tifrunner.gnm1.ann1.BPY5MM Arachis hypogaea HOM05D000022 ORTHO05D000071 4.9e-07 57.4 70 52.9
Gohir.A06G121300 Gossypium hirsutum HOM05D000022 ORTHO05D000071 4.9e-07 57.4 66 47.0
QL05p076551 Quercus lobata HOM05D000022 ORTHO05D000071 4.9e-07 57.4 65 50.8
QL05p076814 Quercus lobata HOM05D000022 ORTHO05D000071 4.9e-07 57.4 65 50.8
QL10p046101 Quercus lobata HOM05D000022 ORTHO05D000071 4.9e-07 57.4 69 49.3
QL93p0073_0963 Quercus lobata HOM05D000022 ORTHO05D000071 4.9e-07 57.4 65 50.8
RcHm_v2.0_Chr5g0004341 Rosa chinensis HOM05D000022 ORTHO05D000071 4.9e-07 57.4 71 49.3
arahy.Tifrunner.gnm1.ann1.E862VI Arachis hypogaea HOM05D000022 ORTHO05D000071 6.4e-07 57.0 70 51.4
Cc07_g17850 Coffea canephora HOM05D000022 ORTHO05D000071 6.4e-07 57.0 69 50.7
Haze_06666 Corylus avellana HOM05D000022 ORTHO05D000071 6.4e-07 57.0 70 51.4
MELO3C007360.2 Cucumis melo HOM05D000022 ORTHO05D000071 6.4e-07 57.0 71 47.9
Oeu050801.1 Olea europaea HOM05D000022 ORTHO05D000071 6.4e-07 57.0 75 49.3
Ca_24369_v3 Cicer arietinum L. HOM05D000022 ORTHO05D000071 8.3e-07 56.6 66 50.0
COL.COLO4_31706 Corchorus olitorius HOM05D000022 ORTHO05D000071 8.3e-07 56.6 66 51.5
Duzib192G0745 Durio zibethinus HOM05D000022 ORTHO05D000071 8.3e-07 56.6 70 45.7
Eucgr.D00833 Eucalyptus grandis HOM05D000022 ORTHO05D000071 8.3e-07 56.6 66 53.0
Gorai.010G146100 Gossypium raimondii HOM05D000022 ORTHO05D000071 8.3e-07 56.6 66 47.0
HanXRQChr17g0558821 Helianthus annuus HOM05D000022 ORTHO05D000071 8.3e-07 56.6 77 49.4
Oeu050797.1 Olea europaea HOM05D000022 ORTHO05D000071 8.3e-07 56.6 74 50.0
Potri.011G028800 Populus trichocarpa HOM05D000022 ORTHO05D000071 8.3e-07 56.6 71 52.1
QL05p076652 Quercus lobata HOM05D000022 ORTHO05D000071 8.3e-07 56.6 65 49.2
Thecc.06G210200 Theobroma cacao HOM05D000022 ORTHO05D000071 8.3e-07 56.6 68 51.5
Cpa.g.sc81.14 Carica papaya HOM05D000022 ORTHO05D000071 1.1e-06 56.2 72 48.6
Eucgr.E03031 Eucalyptus grandis HOM05D000022 ORTHO05D000071 1.1e-06 56.2 70 47.1
FvH4_3g02801 Fragaria vesca HOM05D000022 ORTHO05D005575 1.1e-06 56.2 66 51.5
RcHm_v2.0_Chr4g0408141 Rosa chinensis HOM05D000022 ORTHO05D000071 1.1e-06 56.2 66 47.0
Sed0020919 Sechium edule HOM05D000022 ORTHO05D000071 1.1e-06 56.2 66 48.5
Thecc.06G210500 Theobroma cacao HOM05D000022 ORTHO05D000071 1.1e-06 56.2 68 52.9
Ciclev10014789m.g Citrus clementina HOM05D000022 ORTHO05D000071 1.4e-06 55.8 71 49.3
Gohir.A09G069800 Gossypium hirsutum HOM05D000022 ORTHO05D000071 1.4e-06 55.8 72 51.4
Gorai.010G145300 Gossypium raimondii HOM05D000022 ORTHO05D000071 1.4e-06 55.8 66 50.0
HanXRQChr17g0558781 Helianthus annuus HOM05D000022 ORTHO05D000071 1.4e-06 55.8 77 49.4
Lj8P520T37 Lonicera japonica HOM05D000022 ORTHO05D019438 1.4e-06 55.8 72 51.4
Manes.02G155600 Manihot esculenta HOM05D000022 ORTHO05D000071 1.4e-06 55.8 66 51.5
Potri.011G029000 Populus trichocarpa HOM05D000022 ORTHO05D000071 1.4e-06 55.8 72 52.8
QL93p0073_1108 Quercus lobata HOM05D000022 ORTHO05D019438 1.4e-06 55.8 68 48.5
VMungo0720G0057 Vigna mungo HOM05D000022 ORTHO05D000071 1.4e-06 55.8 71 57.7
GSVIVG01006143001 Vitis vinifera HOM05D000022 ORTHO05D018480 1.4e-06 55.8 67 53.7
Manes.16G014233 Manihot esculenta HOM05D000022 ORTHO05D000071 1.9e-06 55.5 66 47.0
Psat6g010360 Pisum sativum HOM05D000022 ORTHO05D000071 1.9e-06 55.5 66 51.5
Potri.004G026350 Populus trichocarpa HOM05D000022 ORTHO05D000071 1.9e-06 55.5 71 46.5
Sabra11G0052000 Salix brachista HOM05D000022 ORTHO05D000071 1.9e-06 55.5 69 52.2
CiPaw.09G081100 Carya illinoinensis HOM05D000022 ORTHO05D000071 2.4e-06 55.1 66 51.5
Haze_06715 Corylus avellana HOM05D000022 ORTHO05D000071 2.4e-06 55.1 63 49.2
MELO3C007358.2 Cucumis melo HOM05D000022 ORTHO05D000071 2.4e-06 55.1 66 47.0
Gohir.D02G140600 Gossypium hirsutum HOM05D000022 ORTHO05D000071 2.4e-06 55.1 66 51.5
Gohir.D02G140800 Gossypium hirsutum HOM05D000022 ORTHO05D000071 2.4e-06 55.1 66 51.5
Gohir.D02G140900 Gossypium hirsutum HOM05D000022 ORTHO05D000071 2.4e-06 55.1 66 51.5
Gohir.D02G140950 Gossypium hirsutum HOM05D000022 ORTHO05D000071 2.4e-06 55.1 66 51.5
Gorai.005G155800 Gossypium raimondii HOM05D000022 ORTHO05D000071 2.4e-06 55.1 66 51.5
HanXRQChr17g0558791 Helianthus annuus HOM05D000022 ORTHO05D000071 2.4e-06 55.1 77 50.6
Rhsim02G0113100 Rhododendron simsii HOM05D000022 ORTHO05D005575 2.4e-06 55.1 69 47.8
CiPaw.09G084400 Carya illinoinensis HOM05D000022 ORTHO05D000071 3.2e-06 54.7 66 45.5
Eucgr.D00744 Eucalyptus grandis HOM05D000022 ORTHO05D000071 3.2e-06 54.7 66 48.5
Eucgr.E02985 Eucalyptus grandis HOM05D000022 ORTHO05D000071 3.2e-06 54.7 67 52.2
Gorai.010G145000 Gossypium raimondii HOM05D000022 ORTHO05D048201 3.2e-06 54.7 66 50.0
Lalb_Chr21g0307891 Lupinus albus HOM05D000022 ORTHO05D000071 3.2e-06 54.7 66 47.0
Potri.011G029700 Populus trichocarpa HOM05D000022 ORTHO05D000071 3.2e-06 54.7 71 50.7
Potri.011G030000 Populus trichocarpa HOM05D000022 ORTHO05D000071 3.2e-06 54.7 71 50.7
GSVIVG01005163001 Vitis vinifera HOM05D000022 ORTHO05D000071 3.2e-06 54.7 68 47.1
Ciclev10014504m.g Citrus clementina HOM05D000022 ORTHO05D000071 4.1e-06 54.3 66 47.0
Oeu002710.1 Olea europaea HOM05D000022 ORTHO05D000071 4.1e-06 54.3 66 50.0
Prupe.4G028700 Prunus persica HOM05D000022 ORTHO05D000071 4.1e-06 54.3 67 41.8
QL10p045618 Quercus lobata HOM05D000022 ORTHO05D000071 4.1e-06 54.3 69 47.8
Ciclev10014496m.g Citrus clementina HOM05D000022 ORTHO05D000071 5.4e-06 53.9 66 45.5
Ciclev10014534m.g Citrus clementina HOM05D000022 ORTHO05D000071 5.4e-06 53.9 68 47.1
Cc00_g17310 Coffea canephora HOM05D000022 ORTHO05D000071 5.4e-06 53.9 66 50.0
COL.COLO4_31714 Corchorus olitorius HOM05D000022 ORTHO05D000071 5.4e-06 53.9 66 48.5
Dinv22685 Davidia involucrata HOM05D000022 ORTHO05D000071 5.4e-06 53.9 66 50.0
Eucgr.D00834 Eucalyptus grandis HOM05D000022 ORTHO05D000071 5.4e-06 53.9 66 48.5
Manes.16G014401 Manihot esculenta HOM05D000022 ORTHO05D000071 5.4e-06 53.9 66 47.0
Psat0s66g0040 Pisum sativum HOM05D000022 ORTHO05D000071 5.4e-06 53.9 66 53.0
Potri.011G028400 Populus trichocarpa HOM05D000022 ORTHO05D000071 5.4e-06 53.9 67 49.3
GSVIVG01015799001 Vitis vinifera HOM05D000022 ORTHO05D000071 5.4e-06 53.9 66 51.5
COL.COLO4_31700 Corchorus olitorius HOM05D000022 ORTHO05D005575 7.0e-06 53.5 71 46.5
MELO3C007910.2 Cucumis melo HOM05D000022 ORTHO05D005575 7.0e-06 53.5 70 50.0
Glyma.20G140100 Glycine max HOM05D000022 ORTHO05D000071 7.0e-06 53.5 66 48.5
Gohir.D06G125200 Gossypium hirsutum HOM05D000022 ORTHO05D000071 7.0e-06 53.5 66 50.0
Lsat_1_v5_gn_4_57641 Lactuca sativa HOM05D000022 ORTHO05D000071 7.0e-06 53.5 75 45.3
Phvul.008G058700 Phaseolus vulgaris HOM05D000022 ORTHO05D000071 7.0e-06 53.5 69 53.6
QL12p029668 Quercus lobata HOM05D000022 ORTHO05D000071 7.0e-06 53.5 78 39.7
TWI63G1150 Tripterygium wilfordii HOM05D000022 ORTHO05D000071 7.0e-06 53.5 67 46.3
TAR627G0385 Trochodendron aralioides HOM05D000022 ORTHO05D000071 7.0e-06 53.5 67 50.7
CSS0048485 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000071 9.2e-06 53.1 70 51.4
Duzib192G0546 Durio zibethinus HOM05D000022 ORTHO05D000071 9.2e-06 53.1 66 50.0
Gohir.A10G016200 Gossypium hirsutum HOM05D000022 ORTHO05D000071 9.2e-06 53.1 66 48.5
Gohir.D06G212700 Gossypium hirsutum HOM05D000022 ORTHO05D000071 9.2e-06 53.1 66 47.0
Gohir.D09G069700 Gossypium hirsutum HOM05D000022 ORTHO05D000071 9.2e-06 53.1 73 47.9
Gohir.D10G016500 Gossypium hirsutum HOM05D000022 ORTHO05D000071 9.2e-06 53.1 66 48.5
Gorai.005G156000 Gossypium raimondii HOM05D000022 ORTHO05D000071 9.2e-06 53.1 66 50.0
Gorai.006G083900 Gossypium raimondii HOM05D000022 ORTHO05D000071 9.2e-06 53.1 73 47.9
Gorai.010G145400 Gossypium raimondii HOM05D000022 ORTHO05D000071 9.2e-06 53.1 66 48.5
Gorai.010G221300 Gossypium raimondii HOM05D000022 ORTHO05D000071 9.2e-06 53.1 66 48.5
Gorai.010G253400 Gossypium raimondii HOM05D000022 ORTHO05D000071 9.2e-06 53.1 66 47.0
Gorai.011G018100 Gossypium raimondii HOM05D000022 ORTHO05D000071 9.2e-06 53.1 66 48.5
MBI18_g30350_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000071 9.2e-06 53.1 81 45.7
Nitab4.5_0004428g0030 Nicotiana tabacum HOM05D000022 ORTHO05D000071 9.2e-06 53.1 67 52.2
Psat0s66g0160 Pisum sativum HOM05D000022 ORTHO05D005575 9.2e-06 53.1 66 53.0
PGR031G2099 Punica granatum HOM05D000022 ORTHO05D000071 9.2e-06 53.1 70 47.1
QL10p045923 Quercus lobata HOM05D000022 ORTHO05D000071 9.2e-06 53.1 69 46.4
Sed0003484 Sechium edule HOM05D000022 ORTHO05D000071 9.2e-06 53.1 66 54.5
TAR627G0100 Trochodendron aralioides HOM05D000022 ORTHO05D000071 9.2e-06 53.1 65 47.7


User provided reference genes

Program Settings