Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 1.3e-106 389.8 203 100.0
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 2.5e-94 349.0 201 92.5
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 1.2e-93 346.7 201 92.0
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.6e-72 276.6 187 79.1
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.3e-71 272.7 200 78.5
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 3.3e-62 242.3 206 69.9
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 4.3e-62 241.9 205 64.4
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 2.1e-61 239.6 217 65.9
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 2.1e-61 239.6 205 66.3
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 4.7e-61 238.4 204 64.2
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.1e-60 237.3 214 65.0
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 2.6e-59 232.6 210 65.2
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 2.4e-57 226.1 214 62.6
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 4.2e-57 225.3 207 60.4
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 5.4e-57 224.9 205 62.9
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.5e-56 222.2 204 60.8
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 7.8e-56 221.1 204 60.8
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 8.7e-55 217.6 212 60.8
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.3e-54 215.3 201 61.7
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 3.6e-53 212.2 192 63.5
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.1e-53 211.1 207 61.8
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.1e-53 211.1 207 61.4
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.8e-52 209.9 196 61.7
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.4e-52 209.5 207 61.4
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.0e-52 208.8 201 60.7
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 1.2e-51 207.2 200 63.0
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 2.6e-51 206.1 196 60.7
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 4.4e-51 205.3 209 57.9
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.7e-50 203.4 191 63.9
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 4.2e-49 198.7 203 59.6
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 7.1e-49 198.0 195 59.5
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 3.5e-48 195.7 212 57.1
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.5e-48 195.7 206 59.7
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 6.0e-48 194.9 186 59.7
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.3e-47 193.7 204 56.4
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 9.6e-46 187.6 194 60.3
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.4e-44 183.7 190 58.9
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.8e-44 183.3 203 56.2
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.8e-44 183.3 186 58.6
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 4.0e-44 182.2 215 54.9
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 1.2e-43 180.6 212 56.6
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 3.4e-43 179.1 184 59.8
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.9e-42 176.0 215 55.8
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.1e-41 174.1 210 53.8
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.4e-41 173.7 193 56.5
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.4e-41 173.7 202 55.0
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 4.2e-41 172.2 193 58.5
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 7.1e-41 171.4 205 53.7
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 2.7e-40 169.5 208 54.8
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.6e-40 168.7 187 54.0
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 6.0e-40 168.3 205 51.2
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 5.1e-39 165.2 182 55.5
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 6.7e-39 164.9 207 55.6
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.1e-38 164.1 162 58.0
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 4.3e-38 162.2 195 54.9
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 7.4e-38 161.4 188 53.2
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 3.7e-37 159.1 206 52.4
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 6.2e-37 158.3 203 54.7
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 1.1e-36 157.5 198 52.0
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 3.1e-36 156.0 201 51.7
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 4.0e-36 155.6 196 54.6
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.3e-36 155.2 188 51.6
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 6.9e-36 154.8 171 56.1
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 9.0e-36 154.5 191 52.9
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.6e-35 152.9 215 51.2
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 3.4e-35 152.5 183 55.2
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 4.5e-35 152.1 196 52.6
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 7.6e-35 151.4 190 52.6
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 1.3e-34 150.6 177 58.2
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 1.3e-34 150.6 191 52.4
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.7e-34 150.2 180 53.3
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.7e-34 150.2 202 49.0
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 2.2e-34 149.8 185 53.0
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 8.4e-34 147.9 189 50.3
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.4e-33 147.1 209 50.2
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.9e-33 146.7 206 51.9
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.9e-33 146.7 206 51.9
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.5e-33 145.2 206 53.9
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 1.2e-32 144.1 200 51.0
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.6e-32 143.7 186 52.7
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 2.7e-32 142.9 141 62.4
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.0e-31 141.0 208 50.5
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.8e-31 140.2 186 48.4
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 3.9e-31 139.0 214 45.3
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.1e-30 137.5 213 48.8
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 4.3e-30 135.6 190 50.5
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 4.3e-30 135.6 196 52.0
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 5.7e-30 135.2 171 52.6
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 1.3e-29 134.0 138 55.1
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 1.3e-29 134.0 205 47.3
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.3e-29 134.0 189 49.2
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 2.1e-29 133.3 137 55.5
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 4.8e-29 132.1 206 45.1
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.4e-28 130.6 204 48.0
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 5.3e-28 128.6 208 43.8
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 6.9e-28 128.3 167 51.5
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 9.0e-28 127.9 202 47.0
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.4e-27 125.9 194 48.5
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.3e-26 124.0 187 45.5
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.9e-26 122.9 180 50.0
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.5e-25 119.8 205 46.8
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 2.1e-24 116.7 200 45.5
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 7.9e-24 114.8 182 45.6
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 1.0e-23 114.4 165 49.7
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 8.7e-23 111.3 187 45.5
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 8.7e-23 111.3 189 45.0
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.1e-22 110.9 141 50.4
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 9.7e-22 107.8 197 43.1
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 9.7e-22 107.8 193 46.1
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.6e-21 107.1 177 42.9
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 2.2e-21 106.7 197 43.7
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 2.8e-21 106.3 199 42.2
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 2.8e-21 106.3 199 42.2
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 2.8e-21 106.3 190 44.2
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 2.8e-21 106.3 190 41.1
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 3.7e-21 105.9 182 41.2
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 4.8e-21 105.5 224 40.6
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 4.8e-21 105.5 208 40.9
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 1.1e-20 104.4 187 43.9
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 2.4e-20 103.2 195 42.1
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 4.1e-20 102.4 178 46.1
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 6.9e-20 101.7 188 44.7
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 2.6e-19 99.8 179 45.8
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 2.6e-19 99.8 179 45.8
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 2.6e-19 99.8 150 50.7
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 3.4e-19 99.4 179 45.3
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 3.4e-19 99.4 177 47.5
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 4.5e-19 99.0 198 40.9
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 5.9e-19 98.6 168 45.2
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.0e-18 97.8 155 43.9
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 1.3e-18 97.4 187 46.0
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 2.9e-18 96.3 179 44.1
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 6.5e-18 95.1 180 46.1
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.1e-17 94.4 185 41.6
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-17 94.0 187 42.8
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 4.2e-17 92.4 182 43.4
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 4.2e-17 92.4 189 43.9
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 9.4e-17 91.3 87 59.8
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.2e-16 90.9 194 38.1
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 1.6e-16 90.5 199 41.2
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 1.6e-16 90.5 169 39.1
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 6.1e-16 88.6 200 40.0
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 7.9e-16 88.2 193 35.8
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 5.1e-15 85.5 160 44.4
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 4.3e-14 82.4 183 39.3
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 9.7e-14 81.3 138 49.3
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.4e-12 77.4 86 55.8
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 1.4e-12 77.4 103 45.6
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 5.3e-12 75.5 193 37.3
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 9.1e-12 74.7 173 39.9
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 4.5e-11 72.4 58 65.5
ClCG01G022190 Citrullus lanatus HOM05D004361 ORTHO05D004706 5.9e-11 72.0 198 36.9
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 1.0e-10 71.2 235 30.6
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 2.2e-10 70.1 182 31.9
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 8.5e-10 68.2 170 40.6
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 8.5e-10 68.2 77 50.6
Gohir.A05G312801 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.2e-09 65.9 65 55.4
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 5.5e-09 65.5 66 54.5
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 2.7e-08 63.2 209 30.6
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 7.9e-08 61.6 59 50.8
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 3.0e-07 59.7 124 39.5
Gohir.A05G327000 Gossypium hirsutum HOM05D002183 ORTHO05D004706 3.9e-07 59.3 61 54.1
Os01g0787400 Oryza sativa ssp. japonica HOM05D033938 ORTHO05D004706 6.7e-07 58.5 104 41.3
Os07g0530700 Oryza sativa ssp. japonica HOM05D035907 ORTHO05D004706 8.8e-07 58.2 131 36.6
Zm00001eb369720 Zea mays HOM05D033938 ORTHO05D004706 2.0e-06 57.0 104 42.3
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 5.7e-06 55.5 151 33.8


User provided reference genes

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